PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010533435.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 176aa MW: 19486 Da PI: 9.5758

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010533435.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5.1e-08	105	143	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+ r + k+Rt+ q+ s+ qky XP_010533435.1 105 PWTEEEHKLFLLGLHKVGKS------RNFVKTRTPTQVASHAQKY 143 7***************88......77778***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.067	98	148	IPR017930	Myb domain
SuperFamily	SSF46689	1.28E-14	100	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-11	101	146	IPR006447	Myb domain, plants
Pfam	PF00249	4.1E-6	105	143	IPR001005	SANT/Myb domain
CDD	cd00167	4.65E-6	105	144	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.2E-4	105	143	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAAENSSSSE TTGGCVGGGA RKEIMLFGVR VVVDPMRKCV SLNNLSEYEQ PEEMTKKIGR 60 GGDVDRGEEK NTVEVAVAAG YVSADDAVPI SSSSGGNRER KRGIPWTEEE HKLFLLGLHK 120 VGKSRNFVKT RTPTQVASHA QKYFLRRSNL NRRRRRSSLF DMTTETVISD LLCFSE

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010533435.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010533435.1	1e-128	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	6e-49	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	D7KS56	3e-61	D7KS56_ARALL; Myb family transcription factor (Fragment)
STRING	XP_010533435.1	1e-127	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	2e-61	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]