PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534180.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 600aa    MW: 67239.4 Da    PI: 4.8912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30415474159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_010534180.1 415 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 474
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF537562.11E-2711190No hitNo description
Gene3DG3DSA:2.20.25.801.1E-32400476IPR003657WRKY domain
SuperFamilySSF1182901.15E-27408476IPR003657WRKY domain
PROSITE profilePS5081129.023410476IPR003657WRKY domain
SMARTSM007741.9E-37415475IPR003657WRKY domain
PfamPF031062.7E-27416474IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MASESEAPRQ LHVFFFPFMA YGHMIPTLDM AKLFASRGIK STILITHPNV PIFQKPVEVF  60
KNKNPNAEIG IRVLDFPCTE LGLPQGSDNA DFLDSAVIED IFPIVQKLFF STKFLKNQLE  120
DLIETFRPDC LVADMFFPWA TEASKKFGVP RLVFHGTCYF SLCVSYCIRL HKPQKNVASS  180
SEPFVIPHLP GDIVITADQV TDNDEDDEMG EFITEVRDSE KLPMIEEEED EDEDEDEEAT  240
DEGKEDSSPP SSRTRREEDE REELLQLHME MERVKEENTK LRKLVDQKLQ DYRHLEMKFP  300
VIDHTDNKDL PNFLGLQGFH SLGTGRGRKR IPDEEEDDEG RGGDLGLSLS LQSNRKFEEA  360
RDLNDHSNKN KEPYQKLYNS NLLQAGDNAS RLVASSPANR KARVSVRARC ETATMNDGCQ  420
WRKYGQKTAK GNPCPRAYYR CTVAPGCPVR KQVQRCLEDM SILITTYEGT HNHPLPVGAT  480
AMASTTSTAS NSPFLLLDSS DSLSEGGSST YTNLSRLSSF PPPPARVIES SSSSFSPYGD  540
PNMRSLKFSD PSRSRNRLSW LMGKAGEEKK SSESVSTAIV SDPNFSEAVA AAISSLVNKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-22402478176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534180.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534180.10.0PREDICTED: probable WRKY transcription factor 9
SwissprotQ9C9F01e-112WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A1J3E3J91e-115A0A1J3E3J9_NOCCA; Putative WRKY transcription factor 9 (Fragment)
TrEMBLA0A1J3JGJ41e-115A0A1J3JGJ4_NOCCA; Putative WRKY transcription factor 9 (Fragment)
STRINGXP_010534180.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67362741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.13e-88WRKY DNA-binding protein 9