PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534235.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WOX

Protein Properties

Length: 207aa MW: 22966.6 Da PI: 5.0018

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.7	3.5e-22	77	137	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ qle+Le+++e+ n +p++++++e+A++l ++te++V++WFqNrRa+ k+ XP_010534235.1 77 RHRWNPTAAQLEILESVYEEgNGTPNRQRIREIAAELsehgQITETNVYNWFQNRRARSKR 137 89***************99************************************97 PP
2	Wus_type_Homeobox	100.3	1.5e-32	76	139	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW+Pt+ Q++iLe++y++G tPn+++i++i+aeL+e+G+i+++NV++WFQNr+aR+++kq XP_010534235.1 76 ARHRWNPTAAQLEILESVYEEGNGTPNRQRIREIAAELSEHGQITETNVYNWFQNRRARSKRKQ 139 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-20	71	142	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.224	73	138	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.0E-17	74	142	IPR009057	Homeodomain-like
SMART	SM00389	2.4E-15	75	142	IPR001356	Homeobox domain
Pfam	PF00046	9.0E-20	77	137	IPR001356	Homeobox domain
CDD	cd00086	3.47E-15	77	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDERESQNGA YGGRVVVMTE EQMEILRKQI AVYAAICEQL LLLHSSLSSG TRLIGGGGSY 60 FDPLVSSSVS SLRMSARHRW NPTAAQLEIL ESVYEEGNGT PNRQRIREIA AELSEHGQIT 120 ETNVYNWFQN RRARSKRKQQ LTTQVTGVQA AAAAEEEEVE KKIAAVETGG LESYEHILFP 180 SPDLGIEHLL GEAEGPRESS SYRQMQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534235.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534235.1	1e-150	PREDICTED: WUSCHEL-related homeobox 14-like
Swissprot	Q9LM84	4e-86	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	D7KJ49	6e-85	D7KJ49_ARALL; Homeobox-leucine zipper family protein
STRING	XP_010534235.1	1e-150	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	5e-74	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]