PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534323.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YC

Protein Properties

Length: 297aa MW: 33151.9 Da PI: 5.5007

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	60.8	2.8e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + e +t+ ++ +v+r ++fdfl ++v + XP_010534323.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLERGAKTVSSLHLKHCVERYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.5E-26	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	3.1E-20	3	95	IPR009072	Histone-fold
Pfam	PF00808	1.1E-19	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLERGAK 60 TVSSLHLKHC VERYNVFDFL REVVSKVPDY GHGHGHGHGH SDANMDERSI SKRRKPTGDE 120 DSDEELKKSR MEIGHAGPSG RGRGRGRGRG RGRGARTAER EHLNREMEVE PPSISFPPPE 180 DTTKTLIPPI PLLLPQDSSE KKDSDGVPPA EDGSSQPKPQ LQSPKGSQET NTGLRTFDLN 240 AESSVDNNET KQQTGEEMKP EEYPGWSISE MGKIDPMQLA RMGKRLDEDE EDYDEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-20	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	152	RGRGRGRGRGR
2	144	153	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534323.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534323.1	0.0	PREDICTED: dr1-associated corepressor-like isoform X2
TrEMBL	A0A087G5E6	1e-109	A0A087G5E6_ARAAL; Uncharacterized protein
STRING	XP_010534321.1	1e-173	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	2e-95	nuclear factor Y, subunit C11