PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534347.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 286aa MW: 31717.7 Da PI: 6.686

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534347.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	1.9e-08	209	256	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L++l+P + +k a++L + +++++ Lq XP_010534347.1 209 SHSLAERARREKINARMKLLQDLVPGC----NKVSGTAMVLDEIINHVHFLQ 256 8*************************9....455678999999999999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.77E-16	203	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.78E-9	203	260	No hit	No description
PROSITE profile	PS50888	14.386	205	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.4E-16	205	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.8E-6	209	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-9	211	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MERSAVVGAR SVDGPPELSE NGFGLVQFNE EIQRLMSLRQ CTGSSFTALL ELPPTQVVEL 60 LHSTDPGDYP AVVVVGTEDL KPTFTAPVAF PPGVAVTECF SRFPILAGQQ KGGDSPATSS 120 VPSNSNPNNE VVKNEPMEMD TSYRLENQNQ NQNQTQRPVK RKEEERKDKQ STKKSKRSAN 180 AKNSEEEDKD KDKLPYVHVR ARRGQATDSH SLAERARREK INARMKLLQD LVPGCNKVSG 240 TAMVLDEIIN HVHFLQRQVE FLSMRLAAVN PRIDTNLDNI LAAEIA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534347.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534347.1	0.0	PREDICTED: transcription factor bHLH48-like isoform X4
Swissprot	Q3EAI1	2e-70	BH060_ARATH; Transcription factor bHLH60
TrEMBL	A0A2R6S238	1e-86	A0A2R6S238_ACTCH; Transcription factor bHLH48 like
STRING	XP_010534340.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	7e-65	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]