PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534362.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 322aa    MW: 35863.2 Da    PI: 8.3231
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-17175229256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  XP_010534362.1 175 RKKLRLSKEQSAFLEESFKEHSTLNPTHKLALAKQLNLRPRQVEVWFQNRRARTK 229
                     778899***********************************************98 PP
2HD-ZIP_I/II126.51.2e-40175265192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  XP_010534362.1 175 RKKLRLSKEQSAFLEESFKEHSTLNPTHKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 265
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-17165232IPR009057Homeodomain-like
PROSITE profilePS5007116.73171231IPR001356Homeobox domain
SMARTSM003891.1E-14173235IPR001356Homeobox domain
CDDcd000861.36E-14175232No hitNo description
PfamPF000464.8E-15175229IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.3E-17175229IPR009057Homeodomain-like
PROSITE patternPS000270206229IPR017970Homeobox, conserved site
CDDcd146860.00642224263No hitNo description
SMARTSM003402.9E-25231274IPR003106Leucine zipper, homeobox-associated
PfamPF021836.7E-11231265IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MELALSLGDS TKQYFPFLDK QPTTMIDPSS SSSDKDLGFC MGLDVGFGRG SSSSSSSEGE  60
KPAPPKYSDR FRVSSTTDPP LKLDLRPFSP VPRSNQLHFP WPPENGGSRG GRRVETSKLC  120
ETLTLTEEET DHRHCSVTSS SFCLDFGIRS DGKREEMERS ASRASDEEEN VSSTRKKLRL  180
SKEQSAFLEE SFKEHSTLNP THKLALAKQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL  240
KRCCETLTEE NRRLQKELQE LRALKSSRPF YMQLPATTLT ICPSCERVGS TATAAAPPSG  300
SSPGLATSLS RPAKSQVADQ VS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179TRKKLRL
2223231RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534362.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534362.10.0PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-110HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A061F4R61e-110A0A061F4R6_THECC; Homeobox from
TrEMBLA0A0D2NSR61e-110A0A0D2NSR6_GOSRA; Uncharacterized protein
TrEMBLA0A1U8I6V31e-110A0A1U8I6V3_GOSHI; homeobox-leucine zipper protein HAT14-like
STRINGXP_010534362.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49282852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-99homeobox from Arabidopsis thaliana