PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534410.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SBP

Protein Properties

Length: 1044aa MW: 115942 Da PI: 8.4129

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534410.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.5	5.3e-40	143	219	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+ C++dls+ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ XP_010534410.1 143 CQVDCCTEDLSTAKDYHRRHKVCEVHSKASKALVGNQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 219 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.2E-33	136	204	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.043	140	217	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.31E-36	141	222	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.1E-28	143	216	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.97E-7	802	940	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.18E-7	802	938	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.1E-6	805	943	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	8.534	885	938	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1044 aa Download sequence Send to blast
MDMDEVGAQV AAPVFIQQSI SPIGRKRDLY YQIPNLHPHW LPQPQTHTLQ LRDDWNPKTW 60 DWDCRRFEAK PVDSEVVRLD VSVKSSSNSG LTSRNGGGES EGDERSLDLN LGSCPNPVEE 120 TQPNRPNKKV RPGSPGGSNY PKCQVDCCTE DLSTAKDYHR RHKVCEVHSK ASKALVGNQM 180 QRFCQQCSRF HLLSEFDEGK RSCRRRLAGH NRRRRKTQPE EIRTRAVVPG NRDNNSNPNP 240 NMDLVALLTA LACAQGRNEV KPIESPTVPD GEQLLQMLNK INSLPLPTDL FSKLNNIGGL 300 AGKNLQHSLA NPQNDTNGTS QSTMDLLAVL SSTLASSSPD ALALLSQKRD EVNNSDKTKL 360 ASSDHPGITA NVEKRILDVP SAGGERSSSS HQSPSQDSDS HVQDTRSSLS LQLFTSSPDN 420 ESGPTVAFSR KYYSSASSNP LEDRSPSSSP VMQELFPLQT SPETMRLKNE KNTGFRTGCL 480 PLELFGASNR GAENNIFKGF GHQSGYASSG SDNSPPSLNS DSQDRTGRIV FKLLGKDPSH 540 LPGTLRTQIY NWLTNIPSEM ESYIRPGCVV LSVYVAMSAS AWQQLEENLQ ERVRFLLQDS 600 RSDFWRNSRF LVNTGRRVAS YKDGKIRLSK SWRTWNSPEL ISVSPVAVVA GEETTLLVKG 660 RNLTNDGIKI RCAHMGNYTL LKVAGSACRK AEFDELNVNS FRIQGPSHSF LGRCFIEVEN 720 GFRVDSFPLI IANATICKEL NHLEGKFHHR DITEQAHSSP TSREEVLRFL NELGWLFQKK 780 KHMSSDFQGD SDFALTRFKF LLVFSVERDY CTLVRTILDM VVDRNSDRDG LNTESWDILS 840 EIQLLNRAVK RRSPKMAEML IHYSVNPSPD SSKSFIFPPN VSGPGGITPL HLAACSSGSE 900 DMIDVLTNDP QEIGLTSWNT LRDSSGQTPY SYAAVRNNHG YNTLVARKLA DKRNLQVSMN 960 IGIEGIEQMM GRSKSKRSCE TCGTVALKYG RRVSGSNRLF PTPLIHSMLA VAAVCVCVCV 1020 FMHAFPTVRQ GGHFSWGGLD YGPM

Sequence ? help Back to Top

Protein Sequence Length: 1044 aa Download sequence Send to blast

MDMDEVGAQV AAPVFIQQSI SPIGRKRDLY YQIPNLHPHW LPQPQTHTLQ LRDDWNPKTW  60
DWDCRRFEAK PVDSEVVRLD VSVKSSSNSG LTSRNGGGES EGDERSLDLN LGSCPNPVEE  120
TQPNRPNKKV RPGSPGGSNY PKCQVDCCTE DLSTAKDYHR RHKVCEVHSK ASKALVGNQM  180
QRFCQQCSRF HLLSEFDEGK RSCRRRLAGH NRRRRKTQPE EIRTRAVVPG NRDNNSNPNP  240
NMDLVALLTA LACAQGRNEV KPIESPTVPD GEQLLQMLNK INSLPLPTDL FSKLNNIGGL  300
AGKNLQHSLA NPQNDTNGTS QSTMDLLAVL SSTLASSSPD ALALLSQKRD EVNNSDKTKL  360
ASSDHPGITA NVEKRILDVP SAGGERSSSS HQSPSQDSDS HVQDTRSSLS LQLFTSSPDN  420
ESGPTVAFSR KYYSSASSNP LEDRSPSSSP VMQELFPLQT SPETMRLKNE KNTGFRTGCL  480
PLELFGASNR GAENNIFKGF GHQSGYASSG SDNSPPSLNS DSQDRTGRIV FKLLGKDPSH  540
LPGTLRTQIY NWLTNIPSEM ESYIRPGCVV LSVYVAMSAS AWQQLEENLQ ERVRFLLQDS  600
RSDFWRNSRF LVNTGRRVAS YKDGKIRLSK SWRTWNSPEL ISVSPVAVVA GEETTLLVKG  660
RNLTNDGIKI RCAHMGNYTL LKVAGSACRK AEFDELNVNS FRIQGPSHSF LGRCFIEVEN  720
GFRVDSFPLI IANATICKEL NHLEGKFHHR DITEQAHSSP TSREEVLRFL NELGWLFQKK  780
KHMSSDFQGD SDFALTRFKF LLVFSVERDY CTLVRTILDM VVDRNSDRDG LNTESWDILS  840
EIQLLNRAVK RRSPKMAEML IHYSVNPSPD SSKSFIFPPN VSGPGGITPL HLAACSSGSE  900
DMIDVLTNDP QEIGLTSWNT LRDSSGQTPY SYAAVRNNHG YNTLVARKLA DKRNLQVSMN  960
IGIEGIEQMM GRSKSKRSCE TCGTVALKYG RRVSGSNRLF PTPLIHSMLA VAAVCVCVCV  1020
FMHAFPTVRQ GGHFSWGGLD YGPM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-31	133	216	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	846	851	RAVKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534410.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534410.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14 isoform X2
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	A0A1J3JYZ9	0.0	A0A1J3JYZ9_NOCCA; Squamosa promoter-binding-like protein 14
STRING	XP_010534402.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]