PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534610.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 250aa MW: 27612 Da PI: 8.6972

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.2	3e-13	56	102	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h ++E+rRRdriNs ++ Lr+l+P++ Kl+Ka+ L +++ +k+L XP_010534610.1 56 RSHRMAEKRRRDRINSHLAALRKLVPNS-----DKLDKAALLATVIQQVKQL 102 68***********************8.....7**********999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.205	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-14	53	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-14	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.39E-12	56	105	No hit	No description
Pfam	PF00010	7.9E-11	56	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-12	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS51671	8.918	150	226	IPR002912	ACT domain
CDD	cd04873	3.46E-4	152	220	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
METSYESAKW SGCSAQFLWA LQPEPSESEF HVGFSSSSSG NFPADCGGER ADSLSRSHRM 60 AEKRRRDRIN SHLAALRKLV PNSDKLDKAA LLATVIQQVK QLKQQATESP IFSDLPSESD 120 EVTVNLSNTV PNFESDTQEC KGGDRVLLFR ASFCCEDRPE VLSEIIRVLK KLQLETIQAN 180 VISVGGRTRN NFVLMKKGCG SEENSAASAT ALKQSLGAVL SRITSSSSTT SVCRIRSKRQ 240 RWFLSSHYSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534610.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534610.1	0.0	PREDICTED: transcription factor bHLH51
Swissprot	Q9XEF0	1e-107	BH051_ARATH; Transcription factor bHLH51
TrEMBL	A0A384L9H1	1e-105	A0A384L9H1_ARATH; Uncharacterized protein
TrEMBL	C0SV80	1e-105	C0SV80_ARATH; Uncharacterized protein At2g40200 (Fragment)
STRING	XP_010534610.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	4e-92	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]