PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534623.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 358aa    MW: 39540.7 Da    PI: 4.322
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534623.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-181262155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr++  +g+WvAeIr+p+   k +r +lg+f  a+eAa a+++a+++++g
  XP_010534623.1 12 CDYRGVRQRT-WGKWVAEIREPN---KGTRLWLGTFPNAYEAALAYDNAARAMYG 62
                    68*****999.**********93...25************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.03E-311271No hitNo description
PfamPF008472.8E-121262IPR001471AP2/ERF domain
PROSITE profilePS5103221.1531370IPR001471AP2/ERF domain
SMARTSM003801.9E-371376IPR001471AP2/ERF domain
PRINTSPR003674.4E-91425IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-301471IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-201471IPR016177DNA-binding domain
PRINTSPR003674.4E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTGKGGPENF DCDYRGVRQR TWGKWVAEIR EPNKGTRLWL GTFPNAYEAA LAYDNAARAM  60
YGQSARLNLP HITKSSSSAA AMTTITDSTT LTGESEVCAV EDTNVIPSSI QVKLEHCNGE  120
AIPCEVPLDT DMVEAREGRN ARELGSTDDC GIRPVLKEEP HGQMGSNDVM EEAMNGGHEE  180
WTIGHHRQEP EDSWETFDVE ELLNLLDEKH ILPEEEEAKQ GGLEAERPSD FTYQMQYPDA  240
KLLGSLNHMV NADSGMDYGF PLVRPNQPEN ENIDGGQFLG LDLTRLDFRA THLSGIEDDT  300
HNTDQDLEFC PSLPKVATCD CGSYCNRDCD YGSRCGGELS CRKMMKKLGA PPQVSGSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-181470360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534623.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534621.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X1
RefseqXP_010534622.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X2
RefseqXP_010534623.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X2
RefseqXP_010534625.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X2
RefseqXP_010534626.10.0PREDICTED: dehydration-responsive element-binding protein 2C isoform X2
STRINGXP_010534621.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.18e-51ERF family protein