PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534870.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Whirly
Protein Properties Length: 234aa    MW: 25648.4 Da    PI: 10.5391
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534870.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly211.11.1e-65591942137
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 
                     v+k+kaal+v++v+p+f ++dsg ++++r+G+l+l++++a++erkydW+k+q+falsatev++l+++++ +s+effhdp++k+s++G+v+k+l+v
  XP_010534870.1  59 VFKGKAALSVEPVLPSFIKVDSGDFRIERRGSLMLTFMPAIGERKYDWGKRQRFALSATEVGSLISMGPSNSSEFFHDPSMKSSGAGQVKKSLSV 153
                     9********************************************************************************************** PP

          Whirly  97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                     +Pl+dGsG+f++lsv+ns++k+ e+f+vPv+ aefav++++
  XP_010534870.1 154 KPLADGSGYFISLSVNNSILKTMERFTVPVTTAEFAVMKTA 194
                     ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.101.3E-7347212IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.57E-6551222IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.9E-5859193IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MMLKQARSLL SRKFCNPSNS LVGEGSSFRS FASWADSSST RRGFSLGKST GRVFAPYAVF  60
KGKAALSVEP VLPSFIKVDS GDFRIERRGS LMLTFMPAIG ERKYDWGKRQ RFALSATEVG  120
SLISMGPSNS SEFFHDPSMK SSGAGQVKKS LSVKPLADGS GYFISLSVNN SILKTMERFT  180
VPVTTAEFAV MKTACSFALP HIMGWDRLTS QVRVGTEGNN SKVDPQLLEI EWDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-95472135171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-95472135171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-95472135171Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-95472135171Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534870.11e-171PREDICTED: single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotQ8VYF71e-115WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A178W9L51e-113A0A178W9L5_ARATH; WHY2
STRINGXP_010534870.11e-171(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123582731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-117WHIRLY 2