PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010534887.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LBD

Protein Properties

Length: 239aa MW: 27094.3 Da PI: 5.1307

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010534887.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.5	5.4e-39	29	127	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC lapyfp++++++f n+hklFG+sn++k++++l+ e+++am+s++++++ara+dPv G++++i++lq ++e++++el+ XP_010534887.1 29 ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIRTLNLPEKDAAMNSIMFQSDARAKDPVGGCYRIIRELQYEIECTRNELD 123 7********************************************************************************************99 PP DUF260 96 llke 99 l+ + XP_010534887.1 124 LVLQ 127 8866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.236	28	129	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-36	29	125	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MPSGSISAFP STLSNIQRTG NSTGGTNQAC AACKYQRRKC APDCLLAPYF PHDRHRQFLN 60 AHKLFGVSNI TKIIRTLNLP EKDAAMNSIM FQSDARAKDP VGGCYRIIRE LQYEIECTRN 120 ELDLVLQHLA LFRECAHQEP RTQIQEPEDI SSFSSSFDLN NSLPCSYPLH EQAQEQQFCT 180 FTGLQEDMWC LQLQESSTTA NMEQVEDVSS ERHEHVEFEH EGFAERNLNM ASAQLIISS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-27	22	133	4	113	LOB family transfactor Ramosa2.1
5ly0_B	5e-27	22	133	4	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010534887.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010534888.1	1e-180	PREDICTED: LOB domain-containing protein 22
Refseq	XP_010534889.1	1e-180	PREDICTED: LOB domain-containing protein 22
Refseq	XP_010534890.1	1e-180	PREDICTED: LOB domain-containing protein 22
Refseq	XP_010534891.1	1e-180	PREDICTED: LOB domain-containing protein 22
Refseq	XP_019057778.1	1e-180	PREDICTED: LOB domain-containing protein 22
Swissprot	Q9LRW1	1e-101	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	R0HMS1	1e-102	R0HMS1_9BRAS; Uncharacterized protein
TrEMBL	R0I3Y5	1e-103	R0I3Y5_9BRAS; Uncharacterized protein
STRING	XP_010534887.1	1e-180	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6498	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-90	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]