PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535066.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HB-other
Protein Properties Length: 342aa    MW: 37689.2 Da    PI: 7.8522
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535066.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox184.8e-061374655
                    S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    +ft++++ e+e+  ++     p ++  e LA+k            ++ +qV +WFqNrR+  
  XP_010535066.1 13 RFTQTEVAEMEAILQEhnAAMPARNLLEALADKFsesadrkgkiVVQFKQVWNWFQNRRYAL 74
                    689999999999999754678999999999999999999999888999***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.4E-9477IPR009057Homeodomain-like
SMARTSM003897.4E-4781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-71377IPR009057Homeodomain-like
CDDcd000860.001171375No hitNo description
PROSITE profilePS500719.071377IPR001356Homeobox domain
PfamPF167194.6E-42132259IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTQTEVA EMEAILQEHN AAMPARNLLE ALADKFSESA DRKGKIVVQF  60
KQVWNWFQNR RYALRARGNK PPGKLNVSSM PVDGQTRNVL QPIPVPKFSQ APANVPSPSV  120
PAVTRGGSEN SYLEFEAKSA RDGAWYDVQA FLAHRNLETG DPEVQVRFSG FGVEEDEWVN  180
VKKHVRQRSL PCEASECVAV LPGDLILCFQ EGKDQALYFD AIVLDAQRRR HDVRGCRCRF  240
LVRYSHDQSE EIVPLRKICR RPETDYRLQQ LHTAPNDSSN SNQRHKPPPE TTTKSSGLDL  300
IGSVSSAPNS SGAAITTAAA DSVQPSSSSA PISAGPVEDV QL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-481332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-481332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-481332634134SHH1 SAWADEE
4iur_B5e-481332634134SHH1 SAWADEE
4iut_A5e-481332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-481332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-481332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-481332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-481332634134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-481332634134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535066.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535066.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2
SwissprotQ8RWJ70.0SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A1J3DXW20.0A0A1J3DXW2_NOCCA; Protein SAWADEE HOMEODOMAIN-like protein 2
STRINGXP_010535063.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-160sequence-specific DNA binding transcription factors;sequence-specific DNA binding