PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010535118.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 339aa MW: 38310.2 Da PI: 8.5611

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010535118.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.2	1.5e-53	18	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLk+k+++ +l++ +i++vd+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vls+ XP_010535118.1 18 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-AIIADVDLYKFDPWELPAKAWFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLSS 111 79**************************.88***********8878899***********************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy g+ pkg+ktdWvmheyrl XP_010535118.1 112 gGTHKVGVKKALVFYGGKPPKGVKTDWVMHEYRL 145 77788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-65	14	180	IPR003441	NAC domain
PROSITE profile	PS51005	61.781	18	179	IPR003441	NAC domain
Pfam	PF02365	2.3E-28	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MESTDSSGGP PPPQQPNLPP GFRFHPTDEE LVVHYLKRKA ASAPLPVAII ADVDLYKFDP 60 WELPAKAWFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLS SGGTHKVGVK 120 KALVFYGGKP PKGVKTDWVM HEYRLVENKS SNRHPGYDFG NKKQSLRLDD WVLCRIYKKN 180 NTGRHVDNDK DDMIDDMNMI FRQFQPPPSI SSGRMNFFPA RVSNFGTFSD NVINSTIDVT 240 DTNAGLDLAS PSYGSKPELP MMMTATSLKR DLPRPYWPRM AAEEEETVDG SSPSKRFHGG 300 ECSNITPMFA QTPPLMQQEM LSEGLYRTSY QLHGLNWYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-74	17	181	14	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010535118.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010535118.1	0.0	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-143	NAC56_ARATH; NAC transcription factor 56
TrEMBL	D7L4U4	1e-142	D7L4U4_ARALL; ATNAC2
STRING	XP_010535118.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-138	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]