PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010535179.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HD-ZIP

Protein Properties

Length: 837aa MW: 91741.9 Da PI: 6.2145

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010535179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	15	73	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_010535179.1 15 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73 5679*****************************************************97 PP
2	START	171.3	6.2e-54	159	367	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++ +g a+ra+g+v +++++ve++ d++ W + ++++++l+v+ + g+++l XP_010535179.1 159 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGTTGVAARACGLVGLEPTRVVEIVKDRP-LWFRECRAVDVLNVLPTTngGTIELL 252 7899****************************************************9999999999.***********87667** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+d ++++++++lr+l+ XP_010535179.1 253 YMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLTNTQNGPNmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDFEASSVPEVLRPLY 347 ****************************************999999***************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s + ++kt++a+l+++++ XP_010535179.1 348 ESPKVLAQKTTMAALRQLKQ 367 **************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.402	10	74	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	12	78	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-16	15	76	IPR009057	Homeodomain-like
CDD	cd00086	1.31E-16	15	75	No hit	No description
Pfam	PF00046	5.8E-16	16	73	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.5E-18	17	73	IPR009057	Homeodomain-like
CDD	cd14686	2.37E-6	67	106	No hit	No description
PROSITE profile	PS50848	25.951	149	377	IPR002913	START domain
CDD	cd08875	3.94E-74	153	369	No hit	No description
SuperFamily	SSF55961	7.83E-37	158	370	No hit	No description
SMART	SM00234	9.0E-40	158	368	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.6E-21	158	362	IPR023393	START-like domain
Pfam	PF01852	3.9E-51	159	367	IPR002913	START domain
Pfam	PF08670	5.3E-52	694	836	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MSCRDGKAGS FDNGKYVRYT PEQVEALERL YHDCPKPSSI RRQQLIRECP ILSNIEPKQI 60 KVWFQNRRCR EKQRKESSRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENSYFRQHSK 120 NTSLPTKDTS CESALTSGQQ QLASQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ 180 MPGMKPGPDS IGIIAISHGT TGVAARACGL VGLEPTRVVE IVKDRPLWFR ECRAVDVLNV 240 LPTTNGGTIE LLYMQLYAPT TLAPPRDFWL LRYTSVLEDG SLVVCERSLT NTQNGPNMPP 300 VQHFVRAEML PSGYLIRPCE GGGSIIHIVD HIDFEASSVP EVLRPLYESP KVLAQKTTMA 360 ALRQLKQIAQ EVSQTNVNNG WGRRPAALRA LSQRLSRGFN EAVNGFADEG WSVIGDGMDD 420 VTILVNSSPD KLMGLNLAFG NGFPLVSNTV LCAKASMLLQ NVPPAILLRF LREHRSEWVD 480 NSIDAYAAAA IKVGPCSFSG ARVGGFGGQV ILPLAHTVEH EEFLEVVKLE GLGHSPEDAM 540 IPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSGKEVSSPN 600 RTLDLASALE VGPTGTKALS SDGSGNSGVT RSVMTIAFEF AFESQMQDHV ASVARQYVRG 660 IISAVQRVAL ALSPSHVSSQ VGLRTPLGTP EAQTLARWIC HSYRCYMGVN LLKSSSEGDE 720 SVLKNLWNHS DAIMCCSMKA LPVFTFANQA GLDMLETTLV ALQDISLEKI FDENGRKALC 780 SEFPQIMQQG FGCMQGGICI SSMGRPVSYD RAVAWKVLDE DENAHCICFV FVNWSFV

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MSCRDGKAGS FDNGKYVRYT PEQVEALERL YHDCPKPSSI RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKESSRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENSYFRQHSK  120
NTSLPTKDTS CESALTSGQQ QLASQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIIAISHGT TGVAARACGL VGLEPTRVVE IVKDRPLWFR ECRAVDVLNV  240
LPTTNGGTIE LLYMQLYAPT TLAPPRDFWL LRYTSVLEDG SLVVCERSLT NTQNGPNMPP  300
VQHFVRAEML PSGYLIRPCE GGGSIIHIVD HIDFEASSVP EVLRPLYESP KVLAQKTTMA  360
ALRQLKQIAQ EVSQTNVNNG WGRRPAALRA LSQRLSRGFN EAVNGFADEG WSVIGDGMDD  420
VTILVNSSPD KLMGLNLAFG NGFPLVSNTV LCAKASMLLQ NVPPAILLRF LREHRSEWVD  480
NSIDAYAAAA IKVGPCSFSG ARVGGFGGQV ILPLAHTVEH EEFLEVVKLE GLGHSPEDAM  540
IPRDIFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DSGKEVSSPN  600
RTLDLASALE VGPTGTKALS SDGSGNSGVT RSVMTIAFEF AFESQMQDHV ASVARQYVRG  660
IISAVQRVAL ALSPSHVSSQ VGLRTPLGTP EAQTLARWIC HSYRCYMGVN LLKSSSEGDE  720
SVLKNLWNHS DAIMCCSMKA LPVFTFANQA GLDMLETTLV ALQDISLEKI FDENGRKALC  780
SEFPQIMQQG FGCMQGGICI SSMGRPVSYD RAVAWKVLDE DENAHCICFV FVNWSFV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010535179.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010535179.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A1J3CXG9	0.0	A0A1J3CXG9_NOCCA; Homeobox-leucine zipper protein ATHB-15
TrEMBL	V4KGD2	0.0	V4KGD2_EUTSA; Uncharacterized protein
STRING	XP_010535179.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2022	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]