PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010535217.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 173aa MW: 20447 Da PI: 10.087

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010535217.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	149.5	1.6e-46	6	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFh +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat+ gyWkatgkd++v+ XP_010535217.1 6 LPPGFRFH------XAYYLDRKINGRDIEL-EIIPEVDLYKCEPWDLPdKsFLPGNDMEWYFYSPRDKKYPNGSRTNRATRGGYWKATGKDRAVH 93 69999999......479***********.99**********96434555788*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++++g+kktLv+y+gra++g++t+Wvmheyrl XP_010535217.1 94 S-NKRAMGMKKTLVYYRGRAQHGTRTNWVMHEYRL 127 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	48.188	1	148	IPR003441	NAC domain
SuperFamily	SSF101941	5.62E-57	3	149	IPR003441	NAC domain
Pfam	PF02365	1.3E-19	8	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MAPMSLPPGF RFHXAYYLDR KINGRDIELE IIPEVDLYKC EPWDLPDKSF LPGNDMEWYF 60 YSPRDKKYPN GSRTNRATRG GYWKATGKDR AVHSNKRAMG MKKTLVYYRG RAQHGTRTNW 120 VMHEYRLTDP ASSSTLKDSY ALCRVFKKNK EENVGIDDQI KRVDIPKRRQ ERE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-53	1	149	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-53	1	149	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-53	1	149	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-53	1	149	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	9e-53	1	149	15	169	NAC domain-containing protein 19
3swm_B	9e-53	1	149	15	169	NAC domain-containing protein 19
3swm_C	9e-53	1	149	15	169	NAC domain-containing protein 19
3swm_D	9e-53	1	149	15	169	NAC domain-containing protein 19
3swp_A	9e-53	1	149	15	169	NAC domain-containing protein 19
3swp_B	9e-53	1	149	15	169	NAC domain-containing protein 19
3swp_C	9e-53	1	149	15	169	NAC domain-containing protein 19
3swp_D	9e-53	1	149	15	169	NAC domain-containing protein 19
4dul_A	9e-53	1	149	12	166	NAC domain-containing protein 19
4dul_B	9e-53	1	149	12	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010535217.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010535217.1	1e-127	PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 86
Swissprot	Q9FFI5	5e-76	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A067F2E6	9e-91	A0A067F2E6_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A314UQ03	2e-90	A0A314UQ03_PRUYE; NAC domain-containing protein 86
STRING	XP_010535217.1	1e-127	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	2e-88	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]