PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010535324.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

AP2

Protein Properties

Length: 200aa MW: 22306.9 Da PI: 9.3682

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010535324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.9	1.9e-16	67	118	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_010535324.1 67 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 118 57**************988532...5**********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	3.3E-9	1	33	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.84E-9	1	34	IPR016177	DNA-binding domain
PROSITE profile	PS51032	11.785	1	32	IPR001471	AP2/ERF domain
SMART	SM00380	0.0012	1	38	IPR001471	AP2/ERF domain
CDD	cd00018	1.00E-11	1	34	No hit	No description
CDD	cd00018	9.12E-12	67	128	No hit	No description
Pfam	PF00847	7.9E-11	67	118	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.57E-18	67	128	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	7.0E-19	68	127	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	19.111	68	126	IPR001471	AP2/ERF domain
SMART	SM00380	3.1E-30	68	132	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.1E-5	69	80	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.1E-5	108	128	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
YLGGYDKEDK AARAYDLAAL KYWGPTATTN FPISNYTKEM DEMKHSTKQE FIASLRRKSS 60 GFSRGASIYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD IAAIKFRGIN 120 AVTNFEMSRY DIEAIMKSSL PIGGAAKRLK LSSESSSSSD QNPGLTHQSS SDHIHLVQSY 180 GIPFEPAALY HQNHFQHLPA

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010535324.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523352.2	1e-145	PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
Refseq	XP_010535324.1	1e-149	PREDICTED: AP2-like ethylene-responsive transcription factor AIL7, partial
Refseq	XP_019056641.1	1e-145	PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
Refseq	XP_019056642.1	1e-145	PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
Swissprot	Q6J9N8	6e-93	AIL7_ARATH; AP2-like ethylene-responsive transcription factor AIL7
TrEMBL	A0A200PUI0	1e-98	A0A200PUI0_9MAGN; AP2/ERF domain
TrEMBL	A0A445JL26	3e-99	A0A445JL26_GLYSO; AP2-like ethylene-responsive transcription factor AIL7 isoform D
STRING	XP_010523352.1	1e-144	(Tarenaya hassleriana)
STRING	XP_010535324.1	1e-148	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM553	27	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65510.1	1e-92	AINTEGUMENTA-like 7

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]