PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535404.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 421aa    MW: 47910.1 Da    PI: 6.1434
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.8e-13371419147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r+ WT+eE + l ++vk++G+  Wk+I +  +    +Rt+ ++k++w+++
   XP_010535404.1 371 RKGWTPEEVQTLREGVKEYGKS-WKAIKEAYPellANRTPVDLKDKWRNL 419
                      667*****************88.*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.171367421IPR017930Myb domain
SuperFamilySSF466891.79E-13368420IPR009057Homeodomain-like
SMARTSM007175.0E-8370421IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-13371419IPR009057Homeodomain-like
PfamPF002494.3E-12371419IPR001005SANT/Myb domain
CDDcd116609.51E-18374420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MNAEGDKVID KWVCEFVLRR QQNPRACGKR LLSMLRLEED DGCTTLKKSA VLRDICNRLI  60
QGMVDERILD LLELFEKLQL HEDSAILESL KSAYCWVAAE CTVRYMFAVD AMKPFLYLDA  120
LQRIWDLRIG LLRERDSVLV TQELIDWGYN LKNAIDDSEL FQRLRQINTR YSAISYLCEF  180
LKEHWVLVGS PYLELEASRR VRHKGNDTNV EGNPVDVRNG ETSPRPNDAH QCPGHLEDDP  240
VDNTNGQSVF NVGQQEHEQS DDKGKPTVAQ ELKEDLLELE ALINSLTQAG NDQTSGPHST  300
SVTPQPLQAG VRGQDYNKEP ENVNERASGS EGTLSGRVRP HLPNLRSFNV SPLRKGRLPN  360
KPQSSAGRRL RKGWTPEEVQ TLREGVKEYG KSWKAIKEAY PELLANRTPV DLKDKWRNLV  420
A
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535404.10.0PREDICTED: uncharacterized protein LOC104810722
TrEMBLA0A078H6E71e-118A0A078H6E7_BRANA; BnaA10g11980D protein
STRINGXP_010535404.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77201731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-105MYB_related family protein