PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010535473.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRAS

Protein Properties

Length: 598aa MW: 68509.2 Da PI: 6.3624

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010535473.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	382.9	3.8e-117	223	596	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+s d++ a++ L++++ ++ +g+ mqRla+yf+e+L+ar a+ ++e+ + p + +++++++l+a+k+ ++++Pi k+s+ XP_010535473.1 223 LRNLLMQCAQAVASFDNRTATEKLKEIRSHSERHGNGMQRLAFYFAEGLEARFAG-SPETPPVFYPHPCVRTSMVDTLNAYKVMVQACPINKMSY 316 689*************************************************9.66666666666666667****************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 +aN++I + +++++r+HiiDf+i +G+QW++L+qaL++Rp+gpp lRiTg++ p+ g +e+ eetg+rL++f++++++pfe+++ +ak++e+ XP_010535473.1 317 HVANKTIFQLASKATRLHIIDFGILYGFQWACLIQALSNRPGGPPLLRITGIELPQRGfhPSERAEETGRRLKRFCDRFNIPFEYSF-IAKKWET 410 ****************************************************9999***********************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++l+eL ++++E+ +Vn+ ++l +++de+vs++s+rd vLkl+++++P+++v+ e + +ns+ F+ rf eal ++s++fd++e+++ +e+e r+ XP_010535473.1 411 ISLDELVIDREETAVVNCLYRLRYTPDETVSMNSPRDMVLKLFRDINPDLFVFGEVNGMYNSPFFVSRFREALFHFSTIFDMIETTMQAEDEYRT 505 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E+el+ r++vnv+acegaer+ r et+++W+ r ++aGFkpv+ls +++++a ++rk + + ++ ++++l++gWk+r + ++S+W+ XP_010535473.1 506 LLEKELFMRDAVNVIACEGAERVDRPETYKQWQVRTMRAGFKPVKLSREITEEAAEMVRKGFHRDFVIDTDNHWLFQGWKGRVIHALSCWK 596 **************************************************99999988788***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.788	197	576	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-114	223	596	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MDALLEVSID EFRFENGSGT CCNPMNSSLT CFRKAQHDNP PPPSGDSPVC LEDFPVLSYI 60 NHMLMEEDLD CHHSFNFHDS SALQAAERSF YEALHDQSDQ TPGLSDQSDN FTGNFSTASS 120 SHQPASGLTG SPESVLYGES QRRYHRRDDD SLENGRTKKQ PAISFEMEMA EKFEDVLLLC 180 TGRHHDQESS PHSPENQSHK NRAGRAKGSS NRSRRLNPEP VDLRNLLMQC AQAVASFDNR 240 TATEKLKEIR SHSERHGNGM QRLAFYFAEG LEARFAGSPE TPPVFYPHPC VRTSMVDTLN 300 AYKVMVQACP INKMSYHVAN KTIFQLASKA TRLHIIDFGI LYGFQWACLI QALSNRPGGP 360 PLLRITGIEL PQRGFHPSER AEETGRRLKR FCDRFNIPFE YSFIAKKWET ISLDELVIDR 420 EETAVVNCLY RLRYTPDETV SMNSPRDMVL KLFRDINPDL FVFGEVNGMY NSPFFVSRFR 480 EALFHFSTIF DMIETTMQAE DEYRTLLEKE LFMRDAVNVI ACEGAERVDR PETYKQWQVR 540 TMRAGFKPVK LSREITEEAA EMVRKGFHRD FVIDTDNHWL FQGWKGRVIH ALSCWKPA

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MDALLEVSID EFRFENGSGT CCNPMNSSLT CFRKAQHDNP PPPSGDSPVC LEDFPVLSYI  60
NHMLMEEDLD CHHSFNFHDS SALQAAERSF YEALHDQSDQ TPGLSDQSDN FTGNFSTASS  120
SHQPASGLTG SPESVLYGES QRRYHRRDDD SLENGRTKKQ PAISFEMEMA EKFEDVLLLC  180
TGRHHDQESS PHSPENQSHK NRAGRAKGSS NRSRRLNPEP VDLRNLLMQC AQAVASFDNR  240
TATEKLKEIR SHSERHGNGM QRLAFYFAEG LEARFAGSPE TPPVFYPHPC VRTSMVDTLN  300
AYKVMVQACP INKMSYHVAN KTIFQLASKA TRLHIIDFGI LYGFQWACLI QALSNRPGGP  360
PLLRITGIEL PQRGFHPSER AEETGRRLKR FCDRFNIPFE YSFIAKKWET ISLDELVIDR  420
EETAVVNCLY RLRYTPDETV SMNSPRDMVL KLFRDINPDL FVFGEVNGMY NSPFFVSRFR  480
EALFHFSTIF DMIETTMQAE DEYRTLLEKE LFMRDAVNVI ACEGAERVDR PETYKQWQVR  540
TMRAGFKPVK LSREITEEAA EMVRKGFHRD FVIDTDNHWL FQGWKGRVIH ALSCWKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-48	227	596	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010535473.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010535473.1	0.0	PREDICTED: scarecrow-like protein 30
Swissprot	Q9LTI5	0.0	SCL11_ARATH; Scarecrow-like protein 11
TrEMBL	V4KWN0	0.0	V4KWN0_EUTSA; Uncharacterized protein
STRING	XP_010535473.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]