PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535530.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 251aa    MW: 28318.8 Da    PI: 8.345
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.4e-1363991048
                     HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      l ++++ ++G++ W++Iar+++ gRt++++k++w++++
   XP_010535530.1 63 RLVLELHVKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 99
                     57799********.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.612135IPR017877Myb-like domain
SuperFamilySSF466891.55E-1621104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-82150IPR009057Homeodomain-like
PROSITE profilePS5129420.49936103IPR017930Myb domain
SMARTSM007171.1E-840101IPR001005SANT/Myb domain
CDDcd001671.83E-96299No hitNo description
PfamPF002494.4E-116298IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-1762100IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGFYCQSFRF EGGGRSIIGL NRTGKSCRLR WGNYLHPGLK RGKMTPQEER XXXXXXXXXX  60
XERLVLELHV KWGNRWSKIA RKLPGRTDNE IKNYWRTHMR KKAQEKKRSM SRTSSSSNCC  120
SSTATTATTQ DSLQSPDSGS GKASFYDTGG FDGKLNQEVE DCEGGYSMDD IWKEIDQSEA  180
SILKPVIDIY AEQSCYLNYP PLASPAWESS LDSIWNMEAD ESKMSFAIDQ FPHYSGYVRS  240
SSSSPSSSLA G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-152210337105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-142210391159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-142210391159MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-142210360128MYB TRANSFORMING PROTEIN
1mse_C8e-152210337105C-Myb DNA-Binding Domain
1msf_C8e-152210337105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00600PBMTransfer from AT5G59780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535530.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727334e-42AF272733.1 Arabidopsis thaliana putative transcription factor (MYB48) mRNA, complete cds.
GenBankAK1764754e-42AK176475.1 Arabidopsis thaliana mRNA for Myb DNA binding protein -like, complete cds, clone: RAFL24-27-H12.
GenBankAY5195944e-42AY519594.1 Arabidopsis thaliana MYB transcription factor (At3g46130) mRNA, complete cds.
GenBankDQ0752554e-42DQ075255.1 Arabidopsis thaliana MYB transcription factor MYB48-1 (At3g46130) mRNA, complete cds, alternatively spliced.
GenBankDQ0752564e-42DQ075256.1 Arabidopsis thaliana MYB transcription factor MYB48-2 (At3g46130) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535530.11e-178PREDICTED: transcription factor MYB59 isoform X3
SwissprotQ4JL844e-93MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A1J3F6F51e-102A0A1J3F6F5_NOCCA; Transcription factor MYB59
STRINGXP_010535526.11e-162(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.22e-98myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]