PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535618.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TCP
Protein Properties Length: 229aa    MW: 24728.5 Da    PI: 8.4459
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.79e-3028102366
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........s 66 
                     gk+ +++++h+kv+gRdRR+Rl+   a r+FdL++eLG+++d++ti WLl+qa+pai++++g            +
  XP_010535618.1  28 GKQGTSKDRHAKVDGRDRRIRLPPAAASRIFDLTRELGLKTDGETIAWLLRQAEPAIIAAPGRginpydnninnN 102
                     577789*********************************************************555554333220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.2E-2532100IPR005333Transcription factor, TCP
PROSITE profilePS5136924.3693387IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDLRNSDNDK NKEEESAKSK KAHKPCSGKQ GTSKDRHAKV DGRDRRIRLP PAAASRIFDL  60
TRELGLKTDG ETIAWLLRQA EPAIIAAPGR GINPYDNNIN NNVADDYIFD LNNNTNSVVS  120
NNNNGNININ NGDDHDIINV YAYVGSSGGA MGGHGFGVPV VPVVPVRFPA TRNFPVAGDV  180
RMMSGNHGLF GNTRLLASAP ATPPPQPQYD FEAEMAYMQS LSGGRRGAN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00390DAPTransfer from AT3G45150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535618.11e-168PREDICTED: uncharacterized protein LOC104810869
STRINGXP_010535618.11e-168(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17822685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45150.18e-25TCP domain protein 16