PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535673.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 295aa    MW: 33586.2 Da    PI: 5.0002
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535673.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.61.1e-22123183359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST....T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa....gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dgy WrKYGqK++k+s++ rsYYrC+++     C+++k+v++ +edp v  +tY g+H ++
  XP_010535673.1 123 DGYLWRKYGQKKIKNSDHQRSYYRCAYNddhpYCEARKHVQKIQEDPPVYRTTYFGRHACP 183
                     9*************************9887789*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.482116185IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-23116183IPR003657WRKY domain
SuperFamilySSF1182905.49E-22118184IPR003657WRKY domain
SMARTSM007742.6E-29121184IPR003657WRKY domain
PfamPF031067.3E-23123183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSSSREKAVQ ALLYGHGCAN KLKLRLNKRK ADEGSVSSDH QDLAKTILGC FSDALSVLID  60
STTSSSVDQP FEISPTMSSP CPPPLIPNPR RDQRVSPKKR RTSNTEARGE NWRDDSPAPI  120
YYDGYLWRKY GQKKIKNSDH QRSYYRCAYN DDHPYCEARK HVQKIQEDPP VYRTTYFGRH  180
ACPIHQDAAF PVAFNPADDS EGARMIKFGN DVDRENICPG FQLLANRQDQ ILKEESTEEQ  240
LNGDQDQDQD RDVTENKSCP SDLVLESSLF LEDLDLLDAF EFCPFDQFDF PGCQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-131231821068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196102PKKRRTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00619PBMTransfer from AT5G22570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535673.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535673.10.0PREDICTED: probable WRKY transcription factor 38
TrEMBLA0A1J3GT894e-79A0A1J3GT89_NOCCA; Putative WRKY transcription factor 38
STRINGXP_010535673.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136731727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.11e-63WRKY DNA-binding protein 38