PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535748.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 224aa    MW: 25240.4 Da    PI: 4.1911
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535748.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-191060155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++ykGVr +k +g+Wv+eIr p++   r r++lg+f tae+Aa+a +aa  +l+g
  XP_010535748.1 10 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSFETAEKAARAFDAAQYCLRG 60
                    79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-121060IPR001471AP2/ERF domain
CDDcd000185.32E-271070No hitNo description
SMARTSM003809.3E-311174IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-201169IPR016177DNA-binding domain
PROSITE profilePS5103222.0891168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-291169IPR001471AP2/ERF domain
PRINTSPR003673.0E-101223IPR001471AP2/ERF domain
PRINTSPR003673.0E-103450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDMDTQSSSP KYKGVRKRKW GKWVSEIRLP NSRERIWLGS FETAEKAARA FDAAQYCLRG  60
PGASFNFPAN PPEIPGGRSL TPPEIQAVAS RFANEEPPPT TAMSRAQANN DDDDVEGISA  120
RGENPFRGGG AMSEQVEEGI NYINNNNDNN HNYSNDTWTA AEYETTAYWP FLWENNVGRS  180
EELGFFPGET GNLFFPTEQQ LPSNFYDDEV NDDFSLQSLN LWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1611681472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11218KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010535748.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535748.11e-165PREDICTED: ethylene-responsive transcription factor ERF016
SwissprotQ9C5918e-70ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLR0FHP91e-71R0FHP9_9BRAS; Uncharacterized protein
STRINGXP_010535748.11e-164(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.14e-64ERF family protein