PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010536266.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 175aa MW: 20724.9 Da PI: 9.4078

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010536266.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	132.2	3.6e-41	24	148	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 p+G rF Ptdeelv yLk+k+e ++l++ ++i +v+iy+++P++L +++++ ++ ewyfF++rdkky++ r+nr++ g+Wka+gk v+ XP_010536266.1 24 PAGWRFAPTDEELVFLYLKPKIELQPLPM-HMIMDVNIYNHHPETLSAEYEKfNDGEWYFFTPRDKKYPKTYRPNRKAIGGFWKASGKYAGVYL- 116 89*************************.89**********9654443777****************9999**********. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyr 127 +g+++g k+ +vfy+g++p+++ktdW+m+ey XP_010536266.1 117 DGREIGKKRLMVFYNGNHPNSKKTDWLMKEYC 148 999**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-46	21	155	IPR003441	NAC domain
PROSITE profile	PS51005	41.58	23	173	IPR003441	NAC domain
Pfam	PF02365	4.3E-21	24	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MPNRWRARAT EADPEILDFL SKIPAGWRFA PTDEELVFLY LKPKIELQPL PMHMIMDVNI 60 YNHHPETLSA EYEKFNDGEW YFFTPRDKKY PKTYRPNRKA IGGFWKASGK YAGVYLDGRE 120 IGKKRLMVFY NGNHPNSKKT DWLMKEYCCT VATPPPRQET DQENDMQVRV LIKKM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-32	23	147	15	138	Stress-induced transcription factor NAC1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010536266.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010536266.1	1e-130	PREDICTED: NAC transcription factor 25-like
STRING	XP_010536266.1	1e-130	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18874	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	9e-37	NAC domain containing protein 25