PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536484.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 121aa    MW: 13734.9 Da    PI: 8.3588
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536484.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-386103198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C++dC+++pyfp ++p+kf  vhk++Gasnv k+l++lp+  r +a+++l++eA++ra+dPvyG+vg+i+ lq+q++ +++ l 
  XP_010536484.1   6 RCAACKYLRRRCPQDCIFSPYFPPNNPEKFSLVHKIYGASNVAKMLQELPRYARAEAAEALYFEAQCRAEDPVYGCVGIISLLQNQIQITENLLT 100
                     6**************************************************************************************99988777 PP

          DUF260  96 llk 98 
                     +++
  XP_010536484.1 101 KTR 103
                     665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.8115106IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-396101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MNSTKRCAAC KYLRRRCPQD CIFSPYFPPN NPEKFSLVHK IYGASNVAKM LQELPRYARA  60
EAAEALYFEA QCRAEDPVYG CVGIISLLQN QIQITENLLT KTRVEIALLQ TDTTKPDSTL  120
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-36710612111LOB family transfactor Ramosa2.1
5ly0_B2e-36710612111LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00381DAPTransfer from AT3G26620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536484.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536484.12e-86PREDICTED: LOB domain-containing protein 24-like
SwissprotP594671e-55LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594681e-55LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A398A3761e-54A0A398A376_BRACM; Uncharacterized protein
TrEMBLA0A3P6A3M61e-54A0A3P6A3M6_BRACM; Uncharacterized protein
STRINGXP_010536484.17e-86(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.13e-47LOB domain-containing protein 23