PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536489.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 234aa    MW: 25575.5 Da    PI: 5.8575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1759108255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr++  + +Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  XP_010536489.1  59 IYRGVRRRD-SDKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 108
                     69****999.7******9998...347*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1358108IPR001471AP2/ERF domain
CDDcd000181.49E-2758119No hitNo description
SuperFamilySSF541714.77E-1959118IPR016177DNA-binding domain
PROSITE profilePS5103221.95759117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2959119IPR001471AP2/ERF domain
SMARTSM003806.2E-2759123IPR001471AP2/ERF domain
PRINTSPR003674.5E-86071IPR001471AP2/ERF domain
PRINTSPR003674.5E-88298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEQSVHMNPF SSSSDPFLSG SGHGSPVSDT GSSSCPMLAA SCPKKRAGRK KFRETRHPIY  60
RGVRRRDSDK WVCEVREPNK KSRIWLGTFP TAEMAARAHD VAAIALRGRH GACLNFADSA  120
WRLRIPETTS AKDIQKAAAE AAEACHSDTA AAVDPAEGHR SDTAAAAPDD RREILPETTT  180
DCSGEVYVDE ETVFGMPRFL ANMAEGMLLP PPEVTWTHSD VEVEDDVSLW SYSI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536489.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536489.11e-173PREDICTED: dehydration-responsive element-binding protein 1D
SwissprotQ9FJ932e-93DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A178ULT73e-91A0A178ULT7_ARATH; DREB1D
TrEMBLA0A1J3J9R33e-91A0A1J3J9R3_NOCCA; Dehydration-responsive element-binding protein 1D
TrEMBLB2BJ253e-91B2BJ25_ARATH; C-repeat binding factor 4
STRINGXP_010536489.11e-172(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.14e-80C-repeat-binding factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]