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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_010536508.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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| Family | bHLH | ||||||||
| Protein Properties | Length: 222aa MW: 24245.3 Da PI: 8.5007 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 27.4 | 5.9e-09 | 49 | 100 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+ h +Er+RR+++ f+ Lr +lP ++K ++ + Av++I++ q
XP_010536508.1 49 KILHRDIERQRRQEMAALFASLRNHLPLeY---IKGKRAVSDHVNGAVNFIRDAQ 100
6679************************77...9999999***********9865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.78E-12 | 44 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 11.287 | 47 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.9E-8 | 49 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.9E-6 | 49 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 5.72E-7 | 52 | 104 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 222 aa Download sequence Send to blast |
MDPCNNPNAA RYQRQRSFSA AVDGDGDGGG GSSSRDVTGD GGDTKKKKKI LHRDIERQRR 60 QEMAALFASL RNHLPLEYIK GKRAVSDHVN GAVNFIRDAQ KRVKELSARR DELRRVMGSS 120 HHESDPDQAG SSGSGPASVM VQPCVSGIEV AVSSAVTGPE ALPLSRVLQV LYAHGLDVIS 180 SLTTRVNERL MHTIQVEVNS FGCLDLDWLQ QKLMEELILS RG |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_010536508.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010536508.1 | 1e-163 | PREDICTED: transcription factor bHLH126 | ||||
| Swissprot | Q9STJ6 | 6e-88 | BH126_ARATH; Transcription factor bHLH126 | ||||
| TrEMBL | A0A3P6EWZ8 | 1e-91 | A0A3P6EWZ8_BRAOL; Uncharacterized protein | ||||
| STRING | XP_010536508.1 | 1e-163 | (Tarenaya hassleriana) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2968 | 27 | 67 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G25410.1 | 7e-89 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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