PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536593.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 209aa    MW: 24884 Da    PI: 4.7536
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536593.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.44.2e-34241471128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhP++e+lv eyL+kkv ++++++   ++e++ y+++PwdL     ++++e yfF+k++++    +rk+r t+sgyW++  ++ e+ ++
  XP_010536593.1  24 LPPGFRFHPEEEDLVFEYLAKKVLNRPMDF--NLPEIESYNADPWDLL---GEKNNEAYFFAKKQER----ERKRRETDSGYWEECEEEMEMEAR 109
                     79*************************999..69*************6...55788******99886....599****************99998 PP

             NAM  96 kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                     ++++     +g+kkt+vf+ g++++g+ t W+mhe+rl
  XP_010536593.1 110 DQNNyglgfKGMKKTFVFFIGKRSRGSITPWLMHEFRL 147
                     665578888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-3412176IPR003441NAC domain
PROSITE profilePS5100535.94524176IPR003441NAC domain
PfamPF023652.0E-2125147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MKKKSYHMDI SMQRFVVNGR TVRLPPGFRF HPEEEDLVFE YLAKKVLNRP MDFNLPEIES  60
YNADPWDLLG EKNNEAYFFA KKQERERKRR ETDSGYWEEC EEEMEMEARD QNNYGLGFKG  120
MKKTFVFFIG KRSRGSITPW LMHEFRLVYV ANARSPCPIR LKDAIDKWRA IKVFAKSDES  180
EEEEMEEDDF TASDESDGEE VVQNGSVWW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-212218215171NO APICAL MERISTEM PROTEIN
1ut4_B1e-212218215171NO APICAL MERISTEM PROTEIN
1ut7_A1e-212218215171NO APICAL MERISTEM PROTEIN
1ut7_B1e-212218215171NO APICAL MERISTEM PROTEIN
4dul_A1e-212218215171NAC domain-containing protein 19
4dul_B1e-212218215171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536593.11e-155PREDICTED: NAC domain-containing protein 83
RefseqXP_019057928.11e-155PREDICTED: NAC domain-containing protein 83
TrEMBLA0A178UQH23e-70A0A178UQH2_ARATH; NAC097
TrEMBLQ9FGQ13e-70Q9FGQ1_ARATH; NAC domain containing protein 97
STRINGXP_010536593.11e-154(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.11e-63NAC domain containing protein 97