PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536668.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 121aa    MW: 12997.9 Da    PI: 10.0271
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.5e-182976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ede+l+ +v+++G g+W+++ +  g+ R++k+c++rw ++l
   XP_010536668.1 29 KGPWTAAEDEILAAYVREHGEGNWNAVQKNTGLARCGKSCRLRWANHL 76
                     79******************************************9996 PP
2Myb_DNA-binding27.38.6e-0982111131
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartm 31 
                      +g++T+eE+ l++++++qlG++ W++ a+ +
   XP_010536668.1  82 KGAFTAEEERLIIQLHAQLGNK-WARMAAQV 111
                      799*******************.***99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.6132480IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-232779IPR009057Homeodomain-like
SMARTSM007171.3E-132878IPR001005SANT/Myb domain
PfamPF002492.2E-162976IPR001005SANT/Myb domain
SuperFamilySSF466893.95E-2530106IPR009057Homeodomain-like
CDDcd001672.39E-113176No hitNo description
Gene3DG3DSA:1.10.10.605.9E-1480112IPR009057Homeodomain-like
PROSITE profilePS512949.35881121IPR017930Myb domain
SMARTSM007173.881114IPR001005SANT/Myb domain
PfamPF002492.4E-782111IPR001005SANT/Myb domain
CDDcd001670.0032584111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MILYGGGASK EGGSASSDGG GGLAVVLKKG PWTAAEDEIL AAYVREHGEG NWNAVQKNTG  60
LARCGKSCRL RWANHLRPNL KKGAFTAEEE RLIIQLHAQL GNKWARMAAQ VTNPLLLLFI  120
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-212710825105MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB101 and MYB120, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
UniProtTranscription activator (PubMed:24278028). Binds to 5'-CAACTGTC-3' and/or 5'-TAACAAA-3' motif in target gene promoter to promote their expression (By similarity). Together with MYB97 and MYB101, functions as a male factor that controls pollen tube-synergid interaction in fertilization. Required for pollen tube growth arrest and sperm cell release in the female gametophyte, probably via the regulation of pollen tube-specific gene expression (PubMed:24278028, PubMed:23791732). {ECO:0000250|UniProtKB:O80883, ECO:0000269|PubMed:23791732, ECO:0000269|PubMed:24278028}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536668.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in pollen tube 4 hours after pollen germination. {ECO:0000269|PubMed:19714218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536668.16e-84PREDICTED: transcription factor GAMYB-like
SwissprotQ94FL72e-57MY120_ARATH; Transcription factor MYB120
SwissprotQ9S7731e-58MYB97_ARATH; Transcription factor MYB97
TrEMBLA0A3P6CGV92e-59A0A3P6CGV9_BRACM; Uncharacterized protein
TrEMBLM4CFF62e-59M4CFF6_BRARP; Uncharacterized protein
STRINGXP_010536668.12e-83(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.17e-53myb domain protein 120
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]