PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536890.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 243aa    MW: 27665.4 Da    PI: 4.8515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.8e-145396755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      Er+RR+++N++++ Lr+++P+      +K++Ka+i + A++YI++Lq
  XP_010536890.1 53 LSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAIDYIQELQ 96
                    57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-1838109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.7044695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-1449100No hitNo description
SMARTSM003531.1E-1552101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1752111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-125396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.29E-5164231No hitNo description
Gene3DG3DSA:3.30.70.2605.7E-4166223No hitNo description
PROSITE profilePS516718.78168241IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MENIDEEYKN YWETTTFFQN EELDWPLDEA VSGSYDSSSP DGAASSPASK NILSERNRRQ  60
KLNQRLFALR SVVPNITKMD KASIIKDAID YIQELQKEEK RLEVEIRELE SIRSKSLNSE  120
LLVPVTAKKI KQQQQLQVEC GSTRSRSSSS PIEVLELKVT FMGERTVVVS TTCNKRTDTM  180
AKLCEVFQTL NLNILTVNIT SFSGMLFHTA FVQADEEEKE VLRVKIDSAI AAFNDPLRLI  240
QSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-145196954Transcription factor MYC2
5gnj_B3e-145196954Transcription factor MYC2
5gnj_E3e-145196954Transcription factor MYC2
5gnj_F3e-145196954Transcription factor MYC2
5gnj_G3e-145196954Transcription factor MYC2
5gnj_I3e-145196954Transcription factor MYC2
5gnj_M3e-145196954Transcription factor MYC2
5gnj_N3e-145196954Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536890.11e-179PREDICTED: transcription factor bHLH35 isoform X3
SwissprotQ2HIV91e-116BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A087GBL81e-116A0A087GBL8_ARAAL; Uncharacterized protein
STRINGXP_010536888.11e-159(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-100bHLH family protein