PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536904.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 531aa    MW: 57354 Da    PI: 7.4465
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536904.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.1e-15216275155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_010536904.1 216 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 275
                     57*******************666664477446*************************98 PP
2AP247.25.6e-15324375155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010536904.1 324 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 375
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-12216275IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-15216281IPR016177DNA-binding domain
CDDcd000181.37E-17216275No hitNo description
PROSITE profilePS5103218.9217289IPR001471AP2/ERF domain
SMARTSM003802.5E-26217295IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-14217281IPR001471AP2/ERF domain
PRINTSPR003672.8E-6218229IPR001471AP2/ERF domain
PfamPF008476.9E-10324375IPR001471AP2/ERF domain
CDDcd000183.82E-25324385No hitNo description
SuperFamilySSF541717.85E-18324385IPR016177DNA-binding domain
SMARTSM003807.9E-34325389IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-18325383IPR001471AP2/ERF domain
PROSITE profilePS5103219.045325383IPR001471AP2/ERF domain
PRINTSPR003672.8E-6365385IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MMNYNDNIDS CSSAPLNNDS SSPHKNWLAF SLSDGNSLNS SQNPNLALPF SSSSSLSADN  60
RQLSFFHAFA TNPGAPLNAR VHGQEQHGPP GDTGSAGEAS TAILSVFSGG PKLEDFLGGG  120
RVTTAVPTPL ATQMQLQPVG GVVFSGEPTP PSAAEIYDSE LEYIAASFLG NFSGGPTTHS  180
SEGHSVHRQL QQQQKPVVSE TSGPKKNVET FGHRTSIYRG VTRHRWTGRY EAHLWDNSCR  240
REGQSRKGRQ VYLGGYDKEE KAARAYDLAA LKYWGPTTIT NPTTTTNFPI SNYEAELEET  300
KHTTRQEFVA SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE  360
EAAEAYDIAA IKFRGLNAVT NFDISRYDVE SMASGNLPIG GGLVPNRSKT SSSDNNTLDR  420
LCPPHFNVAA STPGPDPSAI FPVKTDSSVH HHHHHHHYWS NVFGLANTAS LVQQGRDSLV  480
PLVGSEGYNG NSASGVASTS TMTIGNNSVS ESYQSAKPNL SLLQTPIFGM E
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010536904.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536904.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ30.0AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLR0EWC30.0R0EWC3_9BRAS; Uncharacterized protein
STRINGXP_010536904.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-169AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]