PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537037.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 165aa    MW: 18808.5 Da    PI: 9.9495
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537037.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.91.9e-191064256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     ++ ++t+ q+ +Le+ F +n+++  e + +LA++lgL+ rqV vWFqN+Ra+ k
  XP_010537037.1 10 NRKKRLTQGQISVLEKSFVMNKKLEPELKHQLASQLGLPPRQVAVWFQNKRARCK 64
                    566789***********************************************99 PP
2HD-ZIP_I/II102.34.1e-3310102193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ++k+rl++ q+++LE+sF +++kLepe K++la++Lgl prqvavWFqn+RAR kt+ lE ++ a+ ++++a  ++++rLe+ev+ L+eel++
  XP_010537037.1  10 NRKKRLTQGQISVLEKSFVMNKKLEPELKHQLASQLGLPPRQVAVWFQNKRARCKTQTLELQHGAIMEKLEAALADKRRLEREVKFLQEELRK 102
                     58***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.48E-18567IPR009057Homeodomain-like
PROSITE profilePS5007117.184666IPR001356Homeobox domain
SMARTSM003896.9E-18870IPR001356Homeobox domain
CDDcd000861.38E-15966No hitNo description
PfamPF000468.0E-171064IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-191369IPR009057Homeodomain-like
PRINTSPR000314.4E-53746IPR000047Helix-turn-helix motif
PROSITE patternPS0002704164IPR017970Homeobox, conserved site
PRINTSPR000314.4E-54662IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEKPQTQTRN RKKRLTQGQI SVLEKSFVMN KKLEPELKHQ LASQLGLPPR QVAVWFQNKR  60
ARCKTQTLEL QHGAIMEKLE AALADKRRLE REVKFLQEEL RKSRDQLSRP MTKNGHLDHR  120
TASPVDDSNC SGDCFAGNDH QVMGLDELYA CLITSGHGST SASWI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537037.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537037.11e-121PREDICTED: homeobox-leucine zipper protein ATHB-52
SwissprotQ9FN294e-61ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A078JVD74e-60A0A078JVD7_BRANA; BnaCnng64030D protein
STRINGXP_010537037.11e-121(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121072632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-63homeobox protein 52