PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537186.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 290aa    MW: 32645.4 Da    PI: 7.0206
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.6e-142370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l  ++  +G g+W++++ + g+ R +k+c++rw++yl
   XP_010537186.1 23 KGLWSPEEDQKLRSYILSHGHGCWTSVPFKAGLQRNGKSCRLRWLNYL 70
                     678*******************************************97 PP
2Myb_DNA-binding51.62.1e-1676121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T+eE++ ++  ++ lG++ W+ Ia++++ gRt++++k++w+++l
   XP_010537186.1  76 RGTFTKEEEDTILTFHASLGNK-WSEIAKYLP-GRTDNEIKNYWHSHL 121
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS51294161870IPR017930Myb domain
SuperFamilySSF466892.86E-2821117IPR009057Homeodomain-like
SMARTSM007172.9E-92272IPR001005SANT/Myb domain
PfamPF002496.9E-132370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-222477IPR009057Homeodomain-like
CDDcd001671.93E-82670No hitNo description
PROSITE profilePS5129425.99971125IPR017930Myb domain
SMARTSM007175.3E-1675123IPR001005SANT/Myb domain
PfamPF002492.3E-1576121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-2678125IPR009057Homeodomain-like
CDDcd001671.03E-1178121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLDQEMGKTR TEERREQKQK QRKGLWSPEE DQKLRSYILS HGHGCWTSVP FKAGLQRNGK  60
SCRLRWLNYL RPGLKRGTFT KEEEDTILTF HASLGNKWSE IAKYLPGRTD NEIKNYWHSH  120
LKKRLLNSCQ ETETPSPQLV GSSIALLSSA TRNRETQVPN RTISSQKLRE ISSSEESSIS  180
VVVTDQSSVL GGFGLAQVNN NLPKLFFSEW FSSSSSDPVD FSSSTFKDSK NNIVPNPEGS  240
VSDCAETMTI NGGSSSLYDI MFQYEDVILE TADCSSSGNF FNIDGNVLYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25231257108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537186.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537186.10.0PREDICTED: transcription factor LAF1-like
SwissprotQ9M0K45e-81LAF1_ARATH; Transcription factor LAF1
TrEMBLR0EUZ28e-84R0EUZ2_9BRAS; Uncharacterized protein
STRINGXP_010537186.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.18e-68myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]