PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537252.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 1058aa    MW: 117859 Da    PI: 8.6604
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.35.8e-40146223178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +Cqv+ C++dls+ak+yhrrhkvC+ hska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  XP_010537252.1 146 MCQVDFCKEDLSNAKDYHRRHKVCKLHSKASKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 223
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.0E-33141208IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.547144221IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.06E-37145226IPR004333Transcription factor, SBP-box
PfamPF031106.4E-28147220IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.25.40.203.1E-4843978IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.53E-5854980IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1058 aa     Download sequence    Send to blast
MDEVGAQVAA PVFVHQSLTP MGRKRDLYFQ IPNLHTHRLP QTQTLQRGDD WNPKMWDWDS  60
RRFEAKPVET EVLRLGNDSQ FDVSAKSNNN NSGLTLMNSG CGGSEVDERN LDLNLGSGLT  120
GMEETQANRQ NKRVRSGSPG GGNYPMCQVD FCKEDLSNAK DYHRRHKVCK LHSKASKALV  180
GKQMQRFCQQ CSRFHLLSEF DEGKRSCRRR LAGHNRRRRK TQPEEITSRV VVPGNRDPNS  240
NPNTDLVALL TALACAQGRN EVKPIESTVV PDRERLLQIL NKINSLPLPM DLASKLNNIG  300
VLARKNLDHS VDNFRNDMNG TSQSTMDLLA VLSSTLASSS HDALALMSQM PVEISDSDKT  360
KLTPSDQGTT ADFEKRTRDF GSVGGEKSSS SHQSPSQDSD SHFQDTRSSL SLQLFTSSPE  420
DESRPTVATS RKYYSSASSN PVEDRSLSSS PVMQELFPKQ ASPETTRSKK DKNTGFRTGC  480
LPLELFGASN RGAENNIFKG FGHQAGYASS GSDNSPPSLN SDAQDRTGRI VFKLLGKDPS  540
QLPGTLRTQI YNWLSNIPSE MESYIRPGCV ILSVYVAMSS AAWEQLEENL QERVGFLLQD  600
SCSEFWRRTR FLVNTGRQLA SYKDGKIRLS KSWRTWNSPE LISVSPVAVV AGEETTLLVR  660
GRNLDNGEIR IRCAHMGSYA SMEVTTSSCK KPVFDELNVS SFRINGGSHG FFGRCFIEVE  720
NGFRGDSFPL IIADAAICKE LNRLEDEFHP KTQVHRDITE ERLHNSDRPS SREEVLCFLN  780
ELGWLFQRNA SSFDIQGGSD FSMTRFKFLL VFSVERDYCS LVRKLLDMVV ERNSGKDGLI  840
RESRDMLAEI QLLNRAVKRR STKMAKMLIH YSVTASSLST SKEFVFLPDT AGPGGITPLH  900
LAASTSGSDG MIDVLTNDPQ EIGLSCWNSL LDKSGHTPYS YASTRNNHRY NALVARKLTD  960
KRNRQVSINI ESRIDGQTGL SNRSSSELKR SSCTTCGTVA LKYQRKISGS YRLFPTPIIH  1020
SMLAVATVCV CVCVFMHAFP IVRQGAHFSW GGLDYGSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-30137220184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1854859RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537252.10.0PREDICTED: squamosa promoter-binding-like protein 14
SwissprotQ8RY950.0SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBLV4KAJ10.0V4KAJ1_EUTSA; Uncharacterized protein
STRINGXP_010537252.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Liu J, et al.
    Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
    Front Plant Sci, 2016. 7: p. 21
    [PMID:26870051]