PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537291.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 333aa    MW: 38185.5 Da    PI: 6.0778
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537291.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.62.4e-37112169562
          zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+++++
  XP_010537291.1 112 APTCPRCASANTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKSRRRQ 169
                     568***************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-26108167IPR003851Zinc finger, Dof-type
PfamPF027011.8E-31113167IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.472113167IPR003851Zinc finger, Dof-type
PROSITE patternPS013610115151IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MHLYFPHTHA LPHLCVHTYT YVYIYIYIFG MIHVCIYTHA HVYMSYTRTY TNTNTHIPKV  60
PIFPHLSSFF TFSSDAHMNK MLPYITYDDY QFPSPEIEKP AKWKLTYGHE PAPTCPRCAS  120
ANTKFCYYNN YSLSQPRYFC KGCRRYWTKG GSLRNIPVGG GCRKSRRRQN SGKRFDRNEN  180
IASERNGLNP DEEFRACPGS NGSEIDLAAV FAKYVNDQSP SSTDNTTRSD EGSPATTSDP  240
LEPVNWEIGQ ETDASFEFYG GFDLTQKIED QGLDQFLADD RREMFEFQSL LDDKEIQEIL  300
ECSFSEPSNQ LNSPASLMIN NNWSSSDLSG FGI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537291.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537291.10.0PREDICTED: dof zinc finger protein DOF1.2
SwissprotP683491e-109DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLR0GT631e-107R0GT63_9BRAS; Uncharacterized protein
STRINGXP_010537291.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.11e-111Dof family protein