PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537453.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 264aa    MW: 29681.3 Da    PI: 8.8172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537453.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.7e-09160207455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++++P +     k +  a++L + ++Y++sLq
  XP_010537453.1 160 SHSLAERVRRGKINDRLRCLQDMVPGC----YKTMGMATMLDEIINYVQSLQ 207
                     8*************************9....356999**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.67E-9154211No hitNo description
SuperFamilySSF474591.57E-16154224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.307156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16156217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-8162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MANFSSSDLQ NFPVDPMTQF SELNAIHYQT FLPFSSTSDP FFFHQALDFP GKSPENFQGI  60
FLPSNQNQPM ISVPCIASKD NESSMISNTE SKKRKARADL SETSGSETLS SSVRISQNGK  120
VPRKQQSSRK GKRSKSIGKE EDKEREVVHV RARRGQATDS HSLAERVRRG KINDRLRCLQ  180
DMVPGCYKTM GMATMLDEII NYVQSLQNQV EFLSMKLTAA STFYDFNSET DAMDSLQRAK  240
AREAVEMGRQ VKDGDAVLHS SWTL
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537453.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537453.10.0PREDICTED: transcription factor BEE 3 isoform X1
SwissprotQ8GWK72e-93BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A3P6GFT11e-102A0A3P6GFT1_BRAOL; Uncharacterized protein
STRINGXP_010537453.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29972765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.18e-85BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]