PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537617.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 470aa    MW: 52772.7 Da    PI: 6.7995
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537617.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-15238297155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aaka++ a++k++g
  XP_010537617.1 238 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 297
                     78*******************655454478446*************************98 PP
2AP248.52.2e-15340391155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_010537617.1 340 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 391
                     78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-12238297IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-17238307IPR016177DNA-binding domain
CDDcd000181.30E-21238307No hitNo description
SMARTSM003809.9E-30239311IPR001471AP2/ERF domain
PROSITE profilePS5103219.085239305IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-16239306IPR001471AP2/ERF domain
PRINTSPR003679.3E-7240251IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-18340401IPR016177DNA-binding domain
PfamPF008474.5E-10340391IPR001471AP2/ERF domain
CDDcd000188.65E-25340401No hitNo description
SMARTSM003805.3E-34341405IPR001471AP2/ERF domain
PROSITE profilePS5103219.098341399IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-19341399IPR001471AP2/ERF domain
PRINTSPR003679.3E-7381401IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MSKWLGFSLT PHLRLGEEEE EQEHQIDGGD EFSDQPLKTS LMPLRSDGSL FSSDPTSRPL  60
HAWRYDINVN LVGANDGGTN DHVSNVHHHH HEDLLGCCLS SSNPQSQQYH NQADANCTNM  120
FNTNPSDLIL HQQTLVTPHH YPSDPSPRLS YGPFETAGSI SGSKSWLSQG SSSLPLLDIA  180
AEERDSNEIN GTISDNIGDN VEPLVIKGDD SRKRSIGKSP VKESIPRKSS DSFGQRTSQY  240
RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQVYLGGYDK EEKAAKAYDL AALKYWGPTT  300
HLNFPVSNYE KELEETKSMN RQEFVAMLRR KSSGFSRGAS VYRGVTRHHQ HGRWQARIGR  360
VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTNAVTNFDI SRYDVKRICS SSTLIAGDQA  420
KRSPTNSGGH DHREAAGDSH QHDHDHDHHR QDQDHDHHGE TIPMFALWNA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537617.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 isoform X2
SwissprotQ1PFE11e-175AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A061GBL41e-166A0A061GBL4_THECC; AP2 domain-containing transcription factor
TrEMBLA0A178WFN21e-168A0A178WFN2_ARATH; Uncharacterized protein
STRINGXP_010537616.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-140AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]