PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537647.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 156aa    MW: 17435.8 Da    PI: 6.6785
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-052391755
                    HHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH 17 NsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                    +  ++eL +llP  +   +s+   + a+ L +A +YIk+Lq
  XP_010537647.1  2 KALYSELNSLLPGfQ---TSREpSTVADQLDEAANYIKKLQ 39
                    56799********77...555538889*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.19E-4143No hitNo description
Gene3DG3DSA:4.10.280.101.8E-5153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-5152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.026138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MKALYSELNS LLPGFQTSRE PSTVADQLDE AANYIKKLQV KVEKMKGRKR KLEGLERRDP  60
VCSGSRESSG VGPIIEIHEV GPILNIVLVT GFHHKFLFYD ILRLLTDEGT DIVHSSFSVA  120
DDTAFHTLQC EVEEYGYGAG GRISERLKRL VNNVSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537647.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019057997.11e-113PREDICTED: transcription factor bHLH36-like isoform X1
SwissprotF4JIJ73e-45BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A3P6FQ181e-49A0A3P6FQ18_BRAOL; Uncharacterized protein
STRINGXP_010537647.11e-112(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-47bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]