PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010537684.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 238aa MW: 26167.8 Da PI: 9.8203

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010537684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.8	4.3e-37	24	83	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +kcprC+s+ntkfCyynny++sqPryfCkaCrryWt+GG lrn+PvG+++rk+k+s+ XP_010537684.1 24 PPPRKCPRCNSDNTKFCYYNNYCMSQPRYFCKACRRYWTHGGILRNIPVGSSSRKSKRSK 83 56789****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	27.987	27	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.2E-31	27	81	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-19	28	73	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDRQDKASND VQEEQNSVQQ QQPPPPRKCP RCNSDNTKFC YYNNYCMSQP RYFCKACRRY 60 WTHGGILRNI PVGSSSRKSK RSKKGSSSSS SSSSPSSSSS PSLSKSSSSP SLNSQSPSIQ 120 TKQVQSVTVP VLQIQETGLL GGSPLSSLTL NRYQTPSYTN DLGPADNLTY LSRGTAVSDA 180 AFIGQDQTRW NRNLVNSMNT CPGTSSGSPN TNMNNCPVRT PYVNQDQWFG HQNYGPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010537684.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010537684.1	1e-172	PREDICTED: dof zinc finger protein DOF3.1-like
STRING	XP_010537684.1	1e-172	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21050.1	3e-25	Dof-type zinc finger domain-containing protein