PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010537867.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family AP2
Protein Properties Length: 337aa    MW: 38308.5 Da    PI: 8.6666
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010537867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-1650109155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n    kr ++++lg ++ +e Aa+a++ a++k++g
  XP_010537867.1  50 SVYRGVTRHRWTGRYEAHLWDkNCWNEtqnKRgRQVYLGAYDDEEAAARAYDLAALKYWG 109
                     78*******************999966656557*************************98 PP
2AP252.41.4e-16152203155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  XP_010537867.1 152 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 203
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1250109IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-1750119IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-1651118IPR001471AP2/ERF domain
PROSITE profilePS5103220.87751117IPR001471AP2/ERF domain
SMARTSM003809.8E-2651123IPR001471AP2/ERF domain
PRINTSPR003673.7E-65263IPR001471AP2/ERF domain
CDDcd000185.91E-23152213No hitNo description
PfamPF008474.2E-12152203IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18152213IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-17153212IPR001471AP2/ERF domain
PROSITE profilePS5103218.189153211IPR001471AP2/ERF domain
SMARTSM003804.2E-25153217IPR001471AP2/ERF domain
PRINTSPR003673.7E-6193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MEKGSRRSKK AADKTRSAIA SEMASTTLGV QKAKRRRRSL PRDAPPQRSS VYRGVTRHRW  60
TGRYEAHLWD KNCWNETQNK RGRQVYLGAY DDEEAAARAY DLAALKYWGR DTILNFPVSG  120
YEEDLKEMES QSKEEYIGSL RRRSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY  180
LGTYATQEEA AIAYDMAAIE YRGLNAVTNF DLSRYLKFLS PENSTDGKVR LTEAPNPDAN  240
PSPERNLESE SSLDQTSSSS DNKDESSPVR KFLLSPSKVK EIIEPSTPPE VAPPRRSFPE  300
DIQTFFGCQD CGMFTTEDDV IFGELGSFLS PEFYSEL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010537867.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010537867.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X3
SwissprotQ94AN41e-150AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1J3IKB91e-166A0A1J3IKB9_NOCCA; AP2-like ethylene-responsive transcription factor
STRINGXP_010537864.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-135ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]