PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538129.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WOX

Protein Properties

Length: 260aa MW: 29410.6 Da PI: 9.4786

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538129.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.5	3.5e-21	99	158	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+ae++e+++++l +++ ++V++WFqN++a+e++ XP_010538129.1 99 TRWNPTQEQIGILEMLYKDgMRTPTAEQIEHITSQLgkygKIEGKNVFYWFQNHKARERQ 158 7***************99************************************97 PP
2	Wus_type_Homeobox	117	8.6e-38	99	160	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi iLe+lyk G+rtP++e+i++it++L +yGkie+kNVfyWFQN+kaRerqkq XP_010538129.1 99 TRWNPTQEQIGILEMLYKDGMRTPTAEQIEHITSQLGKYGKIEGKNVFYWFQNHKARERQKQ 160 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.479	94	159	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.45E-12	94	162	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-8	96	163	IPR001356	Homeobox domain
CDD	cd00086	5.56E-6	99	160	No hit	No description
Pfam	PF00046	9.8E-19	99	158	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-8	100	158	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MKMHQLSRGL SSWDNNNHII INNNRSSSNH HGCQTSLTLS CKRLHSLAAA SPPPSSPSSA 60 TSASALDLKS FINEARETGT NNDHRRDSPH QVETHPGGTR WNPTQEQIGI LEMLYKDGMR 120 TPTAEQIEHI TSQLGKYGKI EGKNVFYWFQ NHKARERQKQ KRNNNNNNLS PKPVSNMTTT 180 TVLSLDNRRE VMAEKGIEDS PYKRACRSWG FEDVELECKT NPCNSSKHDN NGNNHNNNKL 240 FNNNVKTLEL FPLHPELGKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538129.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538129.1	0.0	PREDICTED: WUSCHEL-related homeobox 4
Swissprot	Q6X7J9	3e-76	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	R0I7Y8	2e-79	R0I7Y8_9BRAS; Uncharacterized protein
STRING	XP_010538129.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5980	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	4e-70	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]