PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538149.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SBP
Protein Properties Length: 443aa    MW: 49522.6 Da    PI: 7.638
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538149.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.91.9e-40167244178
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     +CqvegC+ dls+ak+yhr+h+vC  hsk+p vlv gle+rfCqqCsrfh lsefD +krsCrrrL +hn+rrrk+q+
  XP_010538149.1 167 RCQVEGCNLDLSSAKDYHRKHRVCGSHSKCPIVLVGGLERRFCQQCSRFHGLSEFDGKKRSCRRRLTDHNARRRKSQP 244
                     6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.2E-33162229IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.872165242IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-38166245IPR004333Transcription factor, SBP-box
PfamPF031108.1E-31168241IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDCNLKSSVQ WEWDNLVSFG ASATEIPRKL QPLEWEIDDL DPVSLCSSGF GCGGLSSDIG  60
HAFSRSSKST SISSSSTDMR TYNFTPEAGE VLQEDLCISE ELAKGIGTSP PSLEPSFGSG  120
EPILGLKLGK RTYFEDVCAG GNNVVKGQLL PEKRAKSIPQ SLQQAPRCQV EGCNLDLSSA  180
KDYHRKHRVC GSHSKCPIVL VGGLERRFCQ QCSRFHGLSE FDGKKRSCRR RLTDHNARRR  240
KSQPEEPMQL HPALSYDGKQ QMNLMWNKFA CIDTRSEDKF LWEATFGSKP ITPRELETKP  300
VKIETFDGRM HSNSNKRFSS TSVPHRGFGY LPHKTRTART ELFIKETEEE VRVSSQTVGG  360
FQDRDGALSL LSNATSWVPF EARGNTLEPV VAHQLGSSLD NMQTDLQVFE PAAPNRDTMG  420
SQFQLLRGQF SENYHLCPNQ FNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-241682411184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223240KKRSCRRRLTDHNARRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538149.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538149.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010538150.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010538151.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010538152.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_010538153.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8401e-123SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLS4WVY01e-130S4WVY0_ARAAL; SQUAMOSA promoter binding protein-like protein 2
STRINGXP_010538149.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65622644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-118squamosa promoter binding protein-like 2