PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538179.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HB-other

Protein Properties

Length: 1588aa MW: 179278 Da PI: 4.8277

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538179.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.1e-19	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR k+kk XP_010538179.1 31 PKRQMKTPFQLETLEKVYAVETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKDKK 86 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-17	13	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.51E-16	24	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.212	27	87	IPR001356	Homeobox domain
SMART	SM00389	1.8E-18	29	91	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-16	31	86	IPR001356	Homeobox domain
CDD	cd00086	9.71E-15	32	86	No hit	No description
PROSITE profile	PS50827	16.802	518	577	IPR018501	DDT domain
SMART	SM00571	3.8E-23	518	577	IPR018501	DDT domain
Pfam	PF02791	1.1E-17	519	574	IPR018501	DDT domain
Pfam	PF05066	2.5E-16	700	767	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-7	909	953	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-11	1051	1123	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1588 aa Download sequence Send to blast
MGIGSDGENQ ITSGGNGKRK IENANDGLAK PKRQMKTPFQ LETLEKVYAV ETYPSEATRA 60 ELSEKLGLSD RQLQMWFCHR RLKDKKDVPS KKQRKPAEVR PPVNELPIEP VPEMDSGSGS 120 GSGPGYSPYS ESRKNFASVS SSLEDYNKPM GRRTYEPRMS MVERRAIACV EAQLGEPLRE 180 DGPVLGMEFD PLPPDAFGTP IEMQKRSVHP YESKIYEPHD ARSSRQSLDD PSPFRPEVCG 240 RYSDIRTHGM DYDITPTRSS SFLHGNGPLP MSHGIHGNAS RKHSASRQAM PSPFTPTSID 300 DDNDLLEKGT FDLGTEDPYS DVRRKGKIDE VRFPRESETR DSCAQKELER LEIQRRRVLS 360 PPLNEERMRK EMERHERERR KEEGRLIRER LREEERSQRE QRREMERREK FLQKESERAE 420 KKRQKEELRL EKEAMRRKIA IEKATARRIA KESMDLIEDE QLELMELAAA SKGVPSILQL 480 NHETLENLEL FRDSLSTFPA TSVQLKRPSA ISPWKDSEEN VGNLLMVWRF LISFTDVLGL 540 WPFTLDEFVR AFHDYDSRLL GEIHVALLRS IIRDIEGVAR TPFAGSGVNQ YTVANPEGGH 600 PQLVEGAYAW GFDIRSWQKH LNPLTWPEIL RQLALSAGFG PRLKKKGSRL IYTGDKDEVK 660 ACEDIISTIR SGSAAESAFA LMREKGLLLS RKSRHRLTPG TVKFAAFHVL SLEGSKGLTV 720 LELAEKIQKS GLRDLTTSKT PEASISVALT RDVKLFERIA PSTYCVRAPY RKDPADAEAI 780 LAEARKRIRA FENGFTGVED AENVVRDEDS EGDADEDPDI DEITTPANAS KSADDLGEEI 840 FLSGNGKDDM ICNVKADLKN GIEKDLSALP SSILNNNNVA QTPNELCTAG KDNGVSCVDN 900 KNVEVDESND DQSWIQGLTE GDYCHLSVEE RLNALVALIG IANEGNSIRA VLEHRMEAAN 960 ALKKQMWAEA QLDKNCMRDI TETTYEQKSL EVVSNDHSDL HKVPSERTLV TRDTNMSQEN 1020 CSSQYGYASK RSRSQLKSYI GQRAEEMYVY RSLPLGQDRR RNRYWQFVTS SSRNDPCSGL 1080 IFVELHDGKW RVIDTEEAFE ALVTSLNMHG IRESHLRIML RKIEGSFKEN VCHKFQLSRK 1140 HCLKETCAEN EVAGVNSTPD SSAEFDGSNT DSVETSYSFG VELGRNETEK KNSLERYQDF 1200 QRWMWSESCN SLPFYARKYG KKRCHLILQD LVASHLPLGV RLLKSLLVFL EASVPDEALE 1260 SFWTEEQREN WGVELNASSS PEDLIQVLTL FENAIEKEYL SSDFVTVKEL SEASAAGGGS 1320 GLAPVLPWIP RTISAVALRL SELDASIKYD VKQEKPDLTP EDEDERIMLH SGNSPFKSKT 1380 IELGEERDEE TEVFMGSSNG RNKRGRGSFG HGSIRKTKSK KMRAIGSGRK AQSISLQLSH 1440 EGTGRGRRTV RRRPERRSFD DNNCLGRRAA DILRPRNEEE EEDDDDDEEE EEEEEEEVEE 1500 WKVETPSRMM MEGVEEGDNG DDESDMSMDA VEPVEYSQRN WGLDDGDDDD EDEDDGGGDG 1560 DGDGDGGGVP NYTGNDYGVE SEDYSSDT

Sequence ? help Back to Top

Protein Sequence Length: 1588 aa Download sequence Send to blast

MGIGSDGENQ ITSGGNGKRK IENANDGLAK PKRQMKTPFQ LETLEKVYAV ETYPSEATRA  60
ELSEKLGLSD RQLQMWFCHR RLKDKKDVPS KKQRKPAEVR PPVNELPIEP VPEMDSGSGS  120
GSGPGYSPYS ESRKNFASVS SSLEDYNKPM GRRTYEPRMS MVERRAIACV EAQLGEPLRE  180
DGPVLGMEFD PLPPDAFGTP IEMQKRSVHP YESKIYEPHD ARSSRQSLDD PSPFRPEVCG  240
RYSDIRTHGM DYDITPTRSS SFLHGNGPLP MSHGIHGNAS RKHSASRQAM PSPFTPTSID  300
DDNDLLEKGT FDLGTEDPYS DVRRKGKIDE VRFPRESETR DSCAQKELER LEIQRRRVLS  360
PPLNEERMRK EMERHERERR KEEGRLIRER LREEERSQRE QRREMERREK FLQKESERAE  420
KKRQKEELRL EKEAMRRKIA IEKATARRIA KESMDLIEDE QLELMELAAA SKGVPSILQL  480
NHETLENLEL FRDSLSTFPA TSVQLKRPSA ISPWKDSEEN VGNLLMVWRF LISFTDVLGL  540
WPFTLDEFVR AFHDYDSRLL GEIHVALLRS IIRDIEGVAR TPFAGSGVNQ YTVANPEGGH  600
PQLVEGAYAW GFDIRSWQKH LNPLTWPEIL RQLALSAGFG PRLKKKGSRL IYTGDKDEVK  660
ACEDIISTIR SGSAAESAFA LMREKGLLLS RKSRHRLTPG TVKFAAFHVL SLEGSKGLTV  720
LELAEKIQKS GLRDLTTSKT PEASISVALT RDVKLFERIA PSTYCVRAPY RKDPADAEAI  780
LAEARKRIRA FENGFTGVED AENVVRDEDS EGDADEDPDI DEITTPANAS KSADDLGEEI  840
FLSGNGKDDM ICNVKADLKN GIEKDLSALP SSILNNNNVA QTPNELCTAG KDNGVSCVDN  900
KNVEVDESND DQSWIQGLTE GDYCHLSVEE RLNALVALIG IANEGNSIRA VLEHRMEAAN  960
ALKKQMWAEA QLDKNCMRDI TETTYEQKSL EVVSNDHSDL HKVPSERTLV TRDTNMSQEN  1020
CSSQYGYASK RSRSQLKSYI GQRAEEMYVY RSLPLGQDRR RNRYWQFVTS SSRNDPCSGL  1080
IFVELHDGKW RVIDTEEAFE ALVTSLNMHG IRESHLRIML RKIEGSFKEN VCHKFQLSRK  1140
HCLKETCAEN EVAGVNSTPD SSAEFDGSNT DSVETSYSFG VELGRNETEK KNSLERYQDF  1200
QRWMWSESCN SLPFYARKYG KKRCHLILQD LVASHLPLGV RLLKSLLVFL EASVPDEALE  1260
SFWTEEQREN WGVELNASSS PEDLIQVLTL FENAIEKEYL SSDFVTVKEL SEASAAGGGS  1320
GLAPVLPWIP RTISAVALRL SELDASIKYD VKQEKPDLTP EDEDERIMLH SGNSPFKSKT  1380
IELGEERDEE TEVFMGSSNG RNKRGRGSFG HGSIRKTKSK KMRAIGSGRK AQSISLQLSH  1440
EGTGRGRRTV RRRPERRSFD DNNCLGRRAA DILRPRNEEE EEDDDDDEEE EEEEEEEVEE  1500
WKVETPSRMM MEGVEEGDNG DDESDMSMDA VEPVEYSQRN WGLDDGDDDD EDEDDGGGDG  1560
DGDGDGGGVP NYTGNDYGVE SEDYSSDT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	RRLKDKKD
2	783	789	ARKRIRA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538179.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538179.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	V4L2Q3	0.0	V4L2Q3_EUTSA; Uncharacterized protein
STRING	XP_010538179.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1