PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538181.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HB-other

Protein Properties

Length: 1582aa MW: 178554 Da PI: 4.7806

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538181.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5.1e-19	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR k+kk XP_010538181.1 31 PKRQMKTPFQLETLEKVYAVETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKDKK 86 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-17	13	86	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.51E-16	24	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.212	27	87	IPR001356	Homeobox domain
SMART	SM00389	1.8E-18	29	91	IPR001356	Homeobox domain
Pfam	PF00046	1.2E-16	31	86	IPR001356	Homeobox domain
CDD	cd00086	8.61E-15	32	86	No hit	No description
PROSITE profile	PS50827	16.802	512	571	IPR018501	DDT domain
SMART	SM00571	3.8E-23	512	571	IPR018501	DDT domain
Pfam	PF02791	1.1E-17	513	568	IPR018501	DDT domain
Pfam	PF05066	2.5E-16	694	761	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.1E-7	903	947	IPR028942	WHIM1 domain
Pfam	PF15613	1.6E-11	1045	1117	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1582 aa Download sequence Send to blast
MGIGSDGENQ ITSGGNGKRK IENANDGLAK PKRQMKTPFQ LETLEKVYAV ETYPSEATRA 60 ELSEKLGLSD RQLQMWFCHR RLKDKKDVPS KKQRKPAEVR PPVNELPIEP VPEMDSGSGS 120 GSGPGYSPYS ESRKNFASVS SSLEDYNKPM GRRTYEPRMS MVERRAIACV EAQLGEPLRE 180 DGPVLGMEFD PLPPDAFGTP IEMQKRSVHP YESKIYEPHD ARSSRQSLDD PSPFRPEVCG 240 RYSDIRTHGM DYDITPTRSS SFLHGNGPLP MSHGIHGNAS RKHSASRQAM PSPFTPTSID 300 DDNDLLEKGT FDLGTEDPYS DIDEVRFPRE SETRDSCAQK ELERLEIQRR RVLSPPLNEE 360 RMRKEMERHE RERRKEEGRL IRERLREEER SQREQRREME RREKFLQKES ERAEKKRQKE 420 ELRLEKEAMR RKIAIEKATA RRIAKESMDL IEDEQLELME LAAASKGVPS ILQLNHETLE 480 NLELFRDSLS TFPATSVQLK RPSAISPWKD SEENVGNLLM VWRFLISFTD VLGLWPFTLD 540 EFVRAFHDYD SRLLGEIHVA LLRSIIRDIE GVARTPFAGS GVNQYTVANP EGGHPQLVEG 600 AYAWGFDIRS WQKHLNPLTW PEILRQLALS AGFGPRLKKK GSRLIYTGDK DEVKACEDII 660 STIRSGSAAE SAFALMREKG LLLSRKSRHR LTPGTVKFAA FHVLSLEGSK GLTVLELAEK 720 IQKSGLRDLT TSKTPEASIS VALTRDVKLF ERIAPSTYCV RAPYRKDPAD AEAILAEARK 780 RIRAFENGFT GVEDAENVVR DEDSEGDADE DPDIDEITTP ANASKSADDL GEEIFLSGNG 840 KDDMICNVKA DLKNGIEKDL SALPSSILNN NNVAQTPNEL CTAGKDNGVS CVDNKNVEVD 900 ESNDDQSWIQ GLTEGDYCHL SVEERLNALV ALIGIANEGN SIRAVLEHRM EAANALKKQM 960 WAEAQLDKNC MRDITETTYE QKSLEVVSND HSDLHKVPSE RTLVTRDTNM SQENCSSQYG 1020 YASKRSRSQL KSYIGQRAEE MYVYRSLPLG QDRRRNRYWQ FVTSSSRNDP CSGLIFVELH 1080 DGKWRVIDTE EAFEALVTSL NMHGIRESHL RIMLRKIEGS FKENVCHKFQ LSRKHCLKET 1140 CAENEVAGVN STPDSSAEFD GSNTDSVETS YSFGVELGRN ETEKKNSLER YQDFQRWMWS 1200 ESCNSLPFYA RKYGKKRCHL ILQDLVASHL PLGVRLLKSL LVFLEASVPD EALESFWTEE 1260 QRENWGVELN ASSSPEDLIQ VLTLFENAIE KEYLSSDFVT VKELSEASAA GGGSGLAPVL 1320 PWIPRTISAV ALRLSELDAS IKYDVKQEKP DLTPEDEDER IMLHSGNSPF KSKTIELGEE 1380 RDEETEVFMG SSNGRNKRGR GSFGHGSIRK TKSKKMRAIG SGRKAQSISL QLSHEGTGRG 1440 RRTVRRRPER RSFDDNNCLG RRAADILRPR NEEEEEDDDD DEEEEEEEEE EVEEWKVETP 1500 SRMMMEGVEE GDNGDDESDM SMDAVEPVEY SQRNWGLDDG DDDDEDEDDG GGDGDGDGDG 1560 GGVPNYTGND YGVESEDYSS DT

Sequence ? help Back to Top

Protein Sequence Length: 1582 aa Download sequence Send to blast

MGIGSDGENQ ITSGGNGKRK IENANDGLAK PKRQMKTPFQ LETLEKVYAV ETYPSEATRA  60
ELSEKLGLSD RQLQMWFCHR RLKDKKDVPS KKQRKPAEVR PPVNELPIEP VPEMDSGSGS  120
GSGPGYSPYS ESRKNFASVS SSLEDYNKPM GRRTYEPRMS MVERRAIACV EAQLGEPLRE  180
DGPVLGMEFD PLPPDAFGTP IEMQKRSVHP YESKIYEPHD ARSSRQSLDD PSPFRPEVCG  240
RYSDIRTHGM DYDITPTRSS SFLHGNGPLP MSHGIHGNAS RKHSASRQAM PSPFTPTSID  300
DDNDLLEKGT FDLGTEDPYS DIDEVRFPRE SETRDSCAQK ELERLEIQRR RVLSPPLNEE  360
RMRKEMERHE RERRKEEGRL IRERLREEER SQREQRREME RREKFLQKES ERAEKKRQKE  420
ELRLEKEAMR RKIAIEKATA RRIAKESMDL IEDEQLELME LAAASKGVPS ILQLNHETLE  480
NLELFRDSLS TFPATSVQLK RPSAISPWKD SEENVGNLLM VWRFLISFTD VLGLWPFTLD  540
EFVRAFHDYD SRLLGEIHVA LLRSIIRDIE GVARTPFAGS GVNQYTVANP EGGHPQLVEG  600
AYAWGFDIRS WQKHLNPLTW PEILRQLALS AGFGPRLKKK GSRLIYTGDK DEVKACEDII  660
STIRSGSAAE SAFALMREKG LLLSRKSRHR LTPGTVKFAA FHVLSLEGSK GLTVLELAEK  720
IQKSGLRDLT TSKTPEASIS VALTRDVKLF ERIAPSTYCV RAPYRKDPAD AEAILAEARK  780
RIRAFENGFT GVEDAENVVR DEDSEGDADE DPDIDEITTP ANASKSADDL GEEIFLSGNG  840
KDDMICNVKA DLKNGIEKDL SALPSSILNN NNVAQTPNEL CTAGKDNGVS CVDNKNVEVD  900
ESNDDQSWIQ GLTEGDYCHL SVEERLNALV ALIGIANEGN SIRAVLEHRM EAANALKKQM  960
WAEAQLDKNC MRDITETTYE QKSLEVVSND HSDLHKVPSE RTLVTRDTNM SQENCSSQYG  1020
YASKRSRSQL KSYIGQRAEE MYVYRSLPLG QDRRRNRYWQ FVTSSSRNDP CSGLIFVELH  1080
DGKWRVIDTE EAFEALVTSL NMHGIRESHL RIMLRKIEGS FKENVCHKFQ LSRKHCLKET  1140
CAENEVAGVN STPDSSAEFD GSNTDSVETS YSFGVELGRN ETEKKNSLER YQDFQRWMWS  1200
ESCNSLPFYA RKYGKKRCHL ILQDLVASHL PLGVRLLKSL LVFLEASVPD EALESFWTEE  1260
QRENWGVELN ASSSPEDLIQ VLTLFENAIE KEYLSSDFVT VKELSEASAA GGGSGLAPVL  1320
PWIPRTISAV ALRLSELDAS IKYDVKQEKP DLTPEDEDER IMLHSGNSPF KSKTIELGEE  1380
RDEETEVFMG SSNGRNKRGR GSFGHGSIRK TKSKKMRAIG SGRKAQSISL QLSHEGTGRG  1440
RRTVRRRPER RSFDDNNCLG RRAADILRPR NEEEEEDDDD DEEEEEEEEE EVEEWKVETP  1500
SRMMMEGVEE GDNGDDESDM SMDAVEPVEY SQRNWGLDDG DDDDEDEDDG GGDGDGDGDG  1560
GGVPNYTGND YGVESEDYSS DT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	RRLKDKKD
2	777	783	ARKRIRA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538181.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538181.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X3
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	V4L2Q3	0.0	V4L2Q3_EUTSA; Uncharacterized protein
STRING	XP_010538179.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1