PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538182.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HB-other
Protein Properties Length: 1290aa    MW: 146263 Da    PI: 5.8051
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538182.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94e-193186257
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     kR+  t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR k+kk
  XP_010538182.1 31 PKRQMKTPFQLETLEKVYAVETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKDKK 86
                    69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-181386IPR009057Homeodomain-like
SuperFamilySSF466892.74E-162487IPR009057Homeodomain-like
PROSITE profilePS5007116.2122787IPR001356Homeobox domain
SMARTSM003891.8E-182991IPR001356Homeobox domain
PfamPF000469.1E-173186IPR001356Homeobox domain
CDDcd000861.17E-143286No hitNo description
PROSITE profilePS5082716.802518577IPR018501DDT domain
SMARTSM005713.8E-23518577IPR018501DDT domain
PfamPF027919.0E-18519574IPR018501DDT domain
PfamPF050661.9E-16700767IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156128.6E-8909953IPR028942WHIM1 domain
PfamPF156131.3E-1110511123IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1290 aa     Download sequence    Send to blast
MGIGSDGENQ ITSGGNGKRK IENANDGLAK PKRQMKTPFQ LETLEKVYAV ETYPSEATRA  60
ELSEKLGLSD RQLQMWFCHR RLKDKKDVPS KKQRKPAEVR PPVNELPIEP VPEMDSGSGS  120
GSGPGYSPYS ESRKNFASVS SSLEDYNKPM GRRTYEPRMS MVERRAIACV EAQLGEPLRE  180
DGPVLGMEFD PLPPDAFGTP IEMQKRSVHP YESKIYEPHD ARSSRQSLDD PSPFRPEVCG  240
RYSDIRTHGM DYDITPTRSS SFLHGNGPLP MSHGIHGNAS RKHSASRQAM PSPFTPTSID  300
DDNDLLEKGT FDLGTEDPYS DVRRKGKIDE VRFPRESETR DSCAQKELER LEIQRRRVLS  360
PPLNEERMRK EMERHERERR KEEGRLIRER LREEERSQRE QRREMERREK FLQKESERAE  420
KKRQKEELRL EKEAMRRKIA IEKATARRIA KESMDLIEDE QLELMELAAA SKGVPSILQL  480
NHETLENLEL FRDSLSTFPA TSVQLKRPSA ISPWKDSEEN VGNLLMVWRF LISFTDVLGL  540
WPFTLDEFVR AFHDYDSRLL GEIHVALLRS IIRDIEGVAR TPFAGSGVNQ YTVANPEGGH  600
PQLVEGAYAW GFDIRSWQKH LNPLTWPEIL RQLALSAGFG PRLKKKGSRL IYTGDKDEVK  660
ACEDIISTIR SGSAAESAFA LMREKGLLLS RKSRHRLTPG TVKFAAFHVL SLEGSKGLTV  720
LELAEKIQKS GLRDLTTSKT PEASISVALT RDVKLFERIA PSTYCVRAPY RKDPADAEAI  780
LAEARKRIRA FENGFTGVED AENVVRDEDS EGDADEDPDI DEITTPANAS KSADDLGEEI  840
FLSGNGKDDM ICNVKADLKN GIEKDLSALP SSILNNNNVA QTPNELCTAG KDNGVSCVDN  900
KNVEVDESND DQSWIQGLTE GDYCHLSVEE RLNALVALIG IANEGNSIRA VLEHRMEAAN  960
ALKKQMWAEA QLDKNCMRDI TETTYEQKSL EVVSNDHSDL HKVPSERTLV TRDTNMSQEN  1020
CSSQYGYASK RSRSQLKSYI GQRAEEMYVY RSLPLGQDRR RNRYWQFVTS SSRNDPCSGL  1080
IFVELHDGKW RVIDTEEAFE ALVTSLNMHG IRESHLRIML RKIEGSFKEN VCHKFQLSRK  1140
HCLKETCAEN EVAGVNSTPD SSAEFDGSNT DSVETSYSFG VELGRNETEK KNSLERYQDF  1200
QRWMWSESCN SLPFYARKYG KKRCHLILQD LVASHLPLGV RLLKSLLVFL EASVPDEALE  1260
SFWTEEQREN WGVELNASSS PEDLIQVLLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17986RRLKDKKD
2783789ARKRIRA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538182.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538182.10.0PREDICTED: homeobox-DDT domain protein RLT1-like isoform X4
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLV4L2Q30.0V4L2Q3_EUTSA; Uncharacterized protein
STRINGXP_010538179.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1