PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538216.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

WRKY

Protein Properties

Length: 235aa MW: 26593.4 Da PI: 4.957

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538216.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.3e-30	72	129	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ +tY+ eHnh+ XP_010538216.1 72 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRDDPTMILVTYTCEHNHS 129 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.2E-31	65	131	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-26	66	131	IPR003657	WRKY domain
SMART	SM00774	4.5E-35	70	130	IPR003657	WRKY domain
PROSITE profile	PS50811	31.835	72	131	IPR003657	WRKY domain
Pfam	PF03106	4.6E-26	72	128	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MKRVLEMERS SLSESSQETR PESPNSSTFN DMKVVSSPSS PKRRSVQKRV MTVPIRDVEG 60 YRLKGDTTPP LDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRDDPTMILV 120 TYTCEHNHSC PTSITGPNKH RPKPEPEPED DHRSEFMDLG EIETTPSWVD EFTWFGEMET 180 TSSTIFESSV FSSSERTNVS GSADVALFED GEDESLFAGL GELPECSAIF QHEIY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-19	48	132	6	80	Disease resistance protein RRS1
5w3x_D	2e-19	48	132	6	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538216.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538216.1	1e-174	PREDICTED: probable WRKY transcription factor 65 isoform X2
Swissprot	Q9LP56	3e-98	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A178W6S1	6e-96	A0A178W6S1_ARATH; WRKY65
TrEMBL	A0A384LK50	8e-96	A0A384LK50_ARATH; WRKY65
TrEMBL	Q0V866	8e-96	Q0V866_ARATH; At1g29280
STRING	XP_010538215.1	1e-163	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	3e-69	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]