PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538363.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SRS

Protein Properties

Length: 323aa MW: 36115.7 Da PI: 8.6376

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538363.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	28.2	5.6e-09	28	90	5	67
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa 67 + +C +CGn a+ C ++ C+ CC + C hv +a + + q++ a+ +++++ ++ XP_010538363.1 28 KPKCIQCGNVARSRCPFQSCKGCCSRAENPCPIHVLKAAAGSAEKTQGQSTPASDQKSSEGTS 90 568********************************8777766666666666555554444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.2E-7	30	89	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAASSPSLSS NGLSAAATPP QTLRGLNKPK CIQCGNVARS RCPFQSCKGC CSRAENPCPI 60 HVLKAAAGSA EKTQGQSTPA SDQKSSEGTS GATTRLASIR HLSSNFAQFN NLNVPLRPRK 120 PLTIKDALVL NEWRFSKLKE YRDRNIEVEN EAFDRYMKNV NLLEEVFSFA SVPEENNDLA 180 TEQKDDERII SGMKLRLRSN SARTESFREG IREIINQGLV KLQNPRVDEQ PERQAKRAKW 240 EERASAMSEI IDKLNKARTE EDLKSCTEMK SKLYHHRPAS SVEVSGYDAS EKSKDLPGFV 300 RRIEIGEETL KRIDEQGCSL EQI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538363.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538363.1	0.0	PREDICTED: uncharacterized protein LOC104812740
TrEMBL	A0A087HSA1	1e-155	A0A087HSA1_ARAAL; Uncharacterized protein
STRING	XP_010538363.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7362	13	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	1e-147