PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010538452.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

LSD

Protein Properties

Length: 145aa MW: 15834.8 Da PI: 4.7873

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010538452.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.7	1.9e-13	58	82	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYP G+++V+C++C+t+ XP_010538452.1 58 CGSCRRLLSYPQGSKYVKCSCCQTI 82 ***********************97 PP
2	zf-LSD1	45.4	1.3e-14	96	120	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +Cr+lL+YP+GApsVRC++C V XP_010538452.1 96 CDNCRVLLMYPYGAPSVRCSSCSSV 120 **********************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	3.9E-17	55	85	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	8.6E-11	58	82	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.0E-12	93	121	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.1E-12	96	120	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MREREEAPKE KEEATPQQAE DDEEGPPPGW ESAVIPPPSL PPSAAAAADV SEIAQMVCGS 60 CRRLLSYPQG SKYVKCSCCQ TINLVLEAHQ VGQVNCDNCR VLLMYPYGAP SVRCSSCSSV 120 TDIRENNKRP PWSEQQGQPK TSRAV

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010538452.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010538452.1	1e-102	PREDICTED: protein LOL2
Swissprot	O65426	1e-59	LOL2_ARATH; Protein LOL2
TrEMBL	M4DWK8	2e-61	M4DWK8_BRARP; Uncharacterized protein
STRING	XP_010538452.1	1e-102	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13611	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-49	lsd one like 2