PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538664.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 180aa    MW: 20535.2 Da    PI: 8.0642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538664.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-101163255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                    r   + +E++RR ++++  + L +llP++ + +s+  l+  + L +A +YIk+Lq
  XP_010538664.1 11 RSDRKTIEKNRRIQMKTLQSDLNSLLPNS-Q-NSREpLTQPDQLDEAAKYIKKLQ 63
                    666789**********************6.2.55556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.2E-9877IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.496962IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-101176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-71163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-41767No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MESNSNASSS RSDRKTIEKN RRIQMKTLQS DLNSLLPNSQ NSREPLTQPD QLDEAAKYIK  60
KLQVKVERMK ERKRKLVGSE GSSDSPSGFA FRRPRIEIQE MGPIMNIVLV TGLDCKHMFY  120
EIIRVLTDEG TDVSHSSFSV VDDAVFHTLQ CKVEVEECDY EAARGRISER LKRLVDNVSN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538664.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538664.11e-131PREDICTED: uncharacterized protein LOC104812938
SwissprotF4JIJ72e-57BH162_ARATH; Transcription factor bHLH162
TrEMBLV4MFL32e-62V4MFL3_EUTSA; Uncharacterized protein
STRINGXP_010538664.11e-130(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-37bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]