PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538799.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HSF
Protein Properties Length: 336aa    MW: 37426 Da    PI: 4.3176
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.32.1e-3225108294
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                     Fl+k+y++++d++++elisw+e+g+sf+v+ + efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+ el 
  XP_010538799.1  25 FLTKTYQLVDDPTVDELISWNEDGSSFIVWRPAEFARDILPKFFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDGFRRGDDELY 108
                     9*****************************************************************99.........***********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.6E-3717107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.3E-5121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-3122107IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-2925108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1701.3E-4179204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MPGEQTGESP TTAGGDSQRS LPTPFLTKTY QLVDDPTVDE LISWNEDGSS FIVWRPAEFA  60
RDILPKFFKH NNFSSFVRQL NTYGFRKVVP DRWEFSNDGF RRGDDELYHD ARADGGEREV  120
EEGECSVESP PPPAVTVAAV PLATHTISPS NSGEEQVISS NSSPSGILQR TTSCTTTPEL  180
MEENERLRKE NVQLSQELTK LKGLYGGIHT LMTNFSAGQV DCENLNLMPE GKPLDLLPGR  240
QQAVAVASRM EEGIGLNHDD LNPRLFGVSI GVKRARQDDE VVADDAEDEV ENEERQQRGR  300
RSDSREWGRG SDVKSEPMEE ENNSDNRDGP WLELGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231011215127Heat shock factor protein 1
5d5v_B2e-231011215127Heat shock factor protein 1
5d5v_D2e-231011215127Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538799.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538799.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ9T0D31e-119HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLV4N0261e-138V4N026_EUTSA; Uncharacterized protein
STRINGXP_010538799.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-116HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]