PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010538824.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 321aa    MW: 35764.2 Da    PI: 6.0542
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010538824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.82.5e-29151210258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     dDgynWrKYGqK++ g++fprsYYrCt++   +C ++k+v+rs+ dp+v+e+tY+g+H++
  XP_010538824.1 151 DDGYNWRKYGQKDILGARFPRSYYRCTYRntqNCLATKQVQRSDGDPTVFEVTYRGTHTC 210
                     8***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-28147210IPR003657WRKY domain
SuperFamilySSF1182901.18E-25149211IPR003657WRKY domain
SMARTSM007742.7E-40150212IPR003657WRKY domain
PfamPF031066.8E-27151210IPR003657WRKY domain
PROSITE profilePS5081122.033151208IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MESMHMLSWD PRTLISELIH GMEAAKQLRS QIGESPASAP VAETNEILVR RIVTSYEKAL  60
LMLNWSRSPP VQPITPAATV SPVKNPGIIP ESPASLNESP RSEEILDGGS KESNLQGYNF  120
NSKKRWVRKM MPKWTEQVRI SPERGLDGPQ DDGYNWRKYG QKDILGARFP RSYYRCTYRN  180
TQNCLATKQV QRSDGDPTVF EVTYRGTHTC CPQAIPSPAK QVAKKPEPTG NYQKDLLDNL  240
RSNLTVRTEG LDDAFSFPAT SFYDCDFGVG GFCHVSGSDP TDYLGLISAN TSTGSSPIFH  300
VDFPFDPTVE IDAGFPTFLQ E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-191502081674Disease resistance protein RRS1
5w3x_D6e-191502081674Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010538824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010538824.10.0PREDICTED: probable WRKY transcription factor 53 isoform X1
SwissprotQ8H0Y81e-113WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLR0GW301e-120R0GW30_9BRAS; Uncharacterized protein
STRINGXP_010538824.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-115WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]